Factsheet for Solyc09g042210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
peroxisome 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g018420.1.1	Tomato	cytosol	44.62	55.77
Solyc10g045770.1.1	Tomato	cytosol	23.08	27.52
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	37.69	25.79
Solyc09g009110.2.1	Tomato	cytosol	56.92	19.58
VIT_03s0063g01220.t01	Wine grape	cytosol	13.85	18.95
Solyc03g006880.2.1	Tomato	cytosol	53.85	18.52
Solyc06g050110.1.1	Tomato	cytosol	51.54	18.46
Solyc11g072310.1.1	Tomato	cytosol	52.31	17.94
Solyc06g035530.2.1	Tomato	cytosol	50.77	17.74
Solyc01g093980.2.1	Tomato	cytosol	43.08	15.38
Solyc11g013360.1.1	Tomato	cytosol	33.08	12.46
KRH50226	Soybean	cytosol	26.92	9.92
KRH71198	Soybean	cytosol	26.15	9.66
KRH71195	Soybean	cytosol	26.15	9.5
Solyc01g108880.2.1	Tomato	cytosol, extracellular	25.38	9.43
KRH49792	Soybean	nucleus	20.77	9.41
Solyc12g013780.1.1	Tomato	cytosol	26.92	9.38
KRH71201	Soybean	cytosol	25.38	9.38
KRH50228	Soybean	cytosol	25.38	9.38
KRH71196	Soybean	cytosol	24.62	9.09
KRH71199	Soybean	cytosol	23.85	8.81
Solyc01g108860.2.1	Tomato	cytosol	22.31	8.26
KRH50227	Soybean	cytoskeleton, cytosol, peroxisome	15.38	8.13
Solyc10g046820.1.1	Tomato	cytosol, nucleus, peroxisome	12.31	8.12

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009416	GO:GO:0009628	GO:GO:0009653	GO:GO:0009686	GO:GO:0009719	GO:GO:0009740
GO:GO:0009791	GO:GO:0009826	GO:GO:0009908	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049
GO:GO:0016491	GO:GO:0040007	GO:GO:0045544	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	UniProt:K4CSS7	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140
SUPFAM:SSF51197	EnsemblPlantsGene:Solyc09g042210.1	EnsemblPlants:Solyc09g042210.1.1	UniParc:UPI000276C921	:	:

Description

No Description!

Coordinates

chr9:-:22583848..22584464

Molecular Weight (calculated)

15504.7 Da

IEP (calculated)

10.119

GRAVY (calculated)

-0.531

Length

130 amino acids

Sequence
(BLAST)

001: MRLNYYTPHK KQKLTLETRS YYDQTSLIAS HQDCVSGIQF FVDNEWYSLS PNFNHFVVNR RQIYGMKIYA LSDGRYKSSL HREVVNNKIP RKSHALILYP
101: YEYKVVNPPT KWVNTNKLKN ISLIHMAYLL

Best Arabidopsis Sequence Match ( AT5G07200.1 )
(BLAST)

001: MATECIATVP QIFSENKTKE DSSIFDAKLL NQHSHHIPQQ FVWPDHEKPS TDVQPLQVPL IDLAGFLSGD SCLASEATRL VSKAATKHGF FLITNHGVDE
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF

Arabidopsis Description

GA20OX3Gibberellin 20 oxidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q39112]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.