Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g018420.1.1 | Tomato | cytosol | 26.61 | 27.88 |
| Solyc10g045690.1.1 | Tomato | cytosol, nucleus, peroxisome | 43.12 | 24.74 |
| Solyc09g042210.1.1 | Tomato | cytosol, mitochondrion, nucleus, peroxisome | 27.52 | 23.08 |
| PGSC0003DMT400086504 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 22.02 | 21.24 |
| Solyc09g009110.2.1 | Tomato | cytosol | 56.88 | 16.4 |
| Solyc06g050110.1.1 | Tomato | cytosol | 52.29 | 15.7 |
| Solyc01g093980.2.1 | Tomato | cytosol | 52.29 | 15.66 |
| Solyc03g006880.2.1 | Tomato | cytosol | 52.29 | 15.08 |
| KRH38652 | Soybean | cytosol | 51.38 | 14.66 |
| Solyc11g072310.1.1 | Tomato | cytosol | 50.46 | 14.51 |
| Solyc06g035530.2.1 | Tomato | cytosol | 48.62 | 14.25 |
| VIT_16s0022g02310.t01 | Wine grape | cytosol | 49.54 | 14.14 |
| KRG91415 | Soybean | cytosol | 49.54 | 14.1 |
| GSMUA_Achr8P19120_001 | Banana | cytosol, extracellular, peroxisome | 39.45 | 13.96 |
| KRH09174 | Soybean | cytosol | 38.53 | 13.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.37 | 13.62 |
| HORVU5Hr1G124120.1 | Barley | cytosol | 44.95 | 13.61 |
| GSMUA_Achr2P01010_001 | Banana | cytosol, peroxisome, plastid | 38.53 | 13.42 |
| TraesCS5D01G566200.1 | Wheat | cytosol, peroxisome, plastid | 44.04 | 13.3 |
| TraesCS5B01G560300.1 | Wheat | cytosol, peroxisome, plastid | 44.04 | 13.08 |
| Solyc11g013360.1.1 | Tomato | cytosol | 41.28 | 13.04 |
| TraesCS4A01G319100.1 | Wheat | cytosol, peroxisome, plastid | 43.12 | 12.88 |
| HORVU3Hr1G089980.2 | Barley | cytosol | 41.28 | 12.61 |
| EER90481 | Sorghum | cytosol | 43.12 | 12.4 |
| TraesCS3D01G393900.1 | Wheat | cytosol | 40.37 | 12.36 |
| TraesCS3A01G399800.1 | Wheat | cytosol | 40.37 | 12.29 |
| TraesCS3D01G394000.1 | Wheat | cytosol, peroxisome, plastid | 40.37 | 12.26 |
| Os03t0856700-02 | Rice | cytosol, mitochondrion | 40.37 | 11.83 |
| Os07t0169700-01 | Rice | plasma membrane | 39.45 | 11.72 |
| TraesCS3B01G432800.1 | Wheat | cytosol | 38.53 | 11.67 |
| Zm00001d034898_P001 | Maize | plastid | 43.12 | 11.63 |
| KRH35405 | Soybean | cytosol | 38.53 | 11.51 |
| EER95912 | Sorghum | cytosol | 38.53 | 10.99 |
| Zm00001d007894_P001 | Maize | cytosol | 38.53 | 10.66 |
| Solyc10g046820.1.1 | Tomato | cytosol, nucleus, peroxisome | 16.51 | 9.14 |
| Solyc12g013780.1.1 | Tomato | cytosol | 29.36 | 8.58 |
| Solyc01g108880.2.1 | Tomato | cytosol, extracellular | 24.77 | 7.71 |
| Solyc01g108860.2.1 | Tomato | cytosol | 22.02 | 6.84 |
Protein Annotations
| EnsemblPlants:Solyc10g045770.1.1 | EnsemblPlantsGene:Solyc10g045770.1 | Gene3D:2.60.120.330 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 |
| InterPro:Oxoglu/Fe-dep_dioxygenase | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF140 | PFAM:PF03171 | SUPFAM:SSF51197 | UniParc:UPI0002769A3B |
| UniProt:K4CZU1 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:36076660..36077501
Molecular Weight (calculated)
12972.7 Da
IEP (calculated)
7.407
GRAVY (calculated)
-0.146
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTLFYMPLS EKTKSLEENL CALLQCLSFT RRFSSELPWK ETLFTIFCKT RLIKPELTFE TRCHYDPTPL TVHHQDCIIG LHVFVDNKWY SIPQNFNRYV
101: VNIGNTYMV
101: VNIGNTYMV
001: MATECIATVP QIFSENKTKE DSSIFDAKLL NQHSHHIPQQ FVWPDHEKPS TDVQPLQVPL IDLAGFLSGD SCLASEATRL VSKAATKHGF FLITNHGVDE
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF
Arabidopsis Description
GA20OX3Gibberellin 20 oxidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q39112]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.