Factsheet for Solyc06g050110.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036523	Potato	cytosol	76.86	89.71
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	38.29	87.97
Solyc09g009110.2.1	Tomato	cytosol	76.58	73.55
Solyc03g006880.2.1	Tomato	cytosol	76.31	73.28
Solyc06g035530.2.1	Tomato	cytosol	68.59	66.94
Solyc11g072310.1.1	Tomato	cytosol	69.7	66.75
KRH38652	Soybean	cytosol	67.77	64.4
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	33.61	64.21
VIT_16s0022g02310.t01	Wine grape	cytosol	65.84	62.57
KRG91415	Soybean	cytosol	65.84	62.4
KRH09174	Soybean	cytosol	51.52	61.51
KRH35405	Soybean	cytosol	61.16	60.82
Solyc01g093980.2.1	Tomato	cytosol	59.5	59.34
Solyc10g046820.1.1	Tomato	cytosol, nucleus, peroxisome	30.85	56.85
HORVU5Hr1G124120.1	Barley	cytosol	56.2	56.67
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	56.2	56.51
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	55.65	55.34
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	55.92	55.31
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	46.83	55.19
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	46.56	53.99
EER90481	Sorghum	cytosol	55.37	53.03
Solyc10g045770.1.1	Tomato	cytosol	15.7	52.29
Os03t0856700-02	Rice	cytosol, mitochondrion	53.44	52.15
Solyc09g042210.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	18.46	51.54
Zm00001d034898_P001	Maize	plastid	54.82	49.26
GSMUA_AchrUn_...	Banana	cytosol	43.8	49.23
TraesCS3D01G393900.1	Wheat	cytosol	45.45	46.35
HORVU3Hr1G089980.2	Barley	cytosol	45.45	46.22
Solyc11g013360.1.1	Tomato	cytosol	43.8	46.09
TraesCS3A01G399800.1	Wheat	cytosol	45.18	45.81
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	45.18	45.68
Os07t0169700-01	Rice	plasma membrane	46.01	45.5
Solyc09g018420.1.1	Tomato	cytosol	12.95	45.19
TraesCS3B01G432800.1	Wheat	cytosol	44.63	45.0
EER95912	Sorghum	cytosol	44.9	42.67
Zm00001d007894_P001	Maize	cytosol	45.18	41.62
Solyc01g108880.2.1	Tomato	cytosol, extracellular	27.82	28.86
Solyc01g108860.2.1	Tomato	cytosol	27.82	28.77
Solyc12g013780.1.1	Tomato	cytosol	28.1	27.35

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	InterPro:DIOX_N	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009653	GO:GO:0009686
GO:GO:0009719	GO:GO:0009740	GO:GO:0009791	GO:GO:0009826	GO:GO:0009908	GO:GO:0009987
GO:GO:0016043	GO:GO:0016049	GO:GO:0016491	GO:GO:0040007	GO:GO:0045544	GO:GO:0046872
GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:K4C5F8	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140
SUPFAM:SSF51197	EnsemblPlantsGene:Solyc06g050110.1	EnsemblPlants:Solyc06g050110.1.1	UniParc:UPI000276692A	:	:

Description

No Description!

Coordinates

chr6:+:32452499..32454304

Molecular Weight (calculated)

41453.2 Da

IEP (calculated)

6.403

GRAVY (calculated)

-0.382

Length

363 amino acids

Sequence
(BLAST)

001: MDIDSIITND KSSMVDEKNS LIFDASQMKH GKKDCAIPQE LHAPLIDLGG FFSGDPTTMQ EASRLVGEAC KSHGFFLVVN HGVDENLISN AHRNMDMFFS
101: LPLSEKLKAE RKIGEHCGYA SSFTGTFLSK LPWKETLSFQ YSAKEHSSHI VEEYFQKTMG KSFNNLGKVY QEYCNSMSKL SLRIMELLGM SLGVQKENFK
201: DFFEDNESIM RINYYPPCHN PELTLGTWPH YDPTSLTILH QDGVSGLQVF VDNEWHSINP NYNAFVVNIG DTFMALSNGI FKSCLHRAVV NNYIPRKSLV
301: FFLCPDKDKV VRPPTELVDF NKPRIYPDFT WPTLLEFTQK HHPADTNTLQ AFSNWLQHNN VQP

Best Arabidopsis Sequence Match ( AT1G60980.1 )
(BLAST)

001: MECIIKLPQR FNKNKSKKNP LRIFDSTVLN HQPDHIPQEF VWPDHEKPSK NVPILQVPVI DLAGFLSNDP LLVSEAERLV SEAAKKHGFF LVTNHGVDER
101: LLSTAHKLMD TFFKSPNYEK LKAQRKVGET TGYASSFVGR FKENLPWKET LSFSFSPTEK SENYSQTVKN YISKTMGDGY KDFGSVYQEY AETMSNLSLK
201: IMELLGMSLG IKREHFREFF EDNESIFRLN YYPKCKQPDL VLGTGPHCDP TSLTILQQDQ VSGLQVFVDN QWQSIPPIPQ ALVVNIGDTL MALTNGIYKS
301: CLHRAVVNGE TTRKTLAFFL CPKVDKVVKP PSELEGERAY PDFTWSMFLE FTMKHYRADM NTLEEFTNWL KNKGSF

Arabidopsis Description

GA20OX4Gibberellin 20 oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C955]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.