CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034898_P001	Maize	plastid	88.39	82.92
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	71.24	74.79
HORVU5Hr1G124120.1	Barley	cytosol	70.71	74.44
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	72.03	74.39
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	71.24	73.97
Os03t0856700-02	Rice	cytosol, mitochondrion	70.45	71.77
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	55.67	68.51
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	54.88	66.45
PGSC0003DMT400086432	Potato	cytosol	26.65	64.74
CDY72226	Canola	mitochondrion	42.22	61.78
CDY49714	Canola	cytosol, nucleus, peroxisome	56.99	61.71
Bra019165.1-P	Field mustard	cytosol	56.73	61.43
PGSC0003DMT400036523	Potato	cytosol	50.13	61.09
GSMUA_AchrUn_...	Banana	cytosol	51.98	60.99
VIT_16s0022g02310.t01	Wine grape	cytosol	61.21	60.73
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	25.59	60.25
KRG91415	Soybean	cytosol	60.42	59.79
PGSC0003DMT400062314	Potato	cytosol	59.37	59.52
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	24.8	59.49
KRH38652	Soybean	cytosol	59.89	59.42
Solyc03g006880.2.1	Tomato	cytosol	58.84	58.99
PGSC0003DMT400071866	Potato	cytosol	58.31	58.93
VIT_15s0048g01320.t01	Wine grape	cytosol	59.37	58.59
Solyc06g035530.2.1	Tomato	cytosol	57.26	58.33
KRH35405	Soybean	cytosol	55.94	58.08
Solyc01g093980.2.1	Tomato	cytosol	55.67	57.97
KRH09174	Soybean	cytosol	46.17	57.57
PGSC0003DMT400000036	Potato	cytosol	55.41	57.53
CDX92707	Canola	cytosol, nucleus, peroxisome	58.05	57.44
PGSC0003DMT400042644	Potato	cytosol	50.92	57.44
Solyc11g072310.1.1	Tomato	cytosol	57.26	57.26
CDX94446	Canola	cytosol, nucleus, peroxisome	56.73	57.18
PGSC0003DMT400090397	Potato	cytosol	56.2	57.1
AT4G25420.1	Thale cress	cytosol, nucleus, peroxisome	56.73	57.03
CDY55723	Canola	cytosol, nucleus, peroxisome	56.46	56.91
Bra013890.1-P	Field mustard	cytosol	56.2	56.65
CDY27101	Canola	cytosol, nucleus, peroxisome	55.67	55.97
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	55.67	55.82
Bra022565.1-P	Field mustard	cytosol	55.41	55.7
Solyc09g009110.2.1	Tomato	cytosol	55.41	55.56
CDX91609	Canola	cytosol, nucleus, peroxisome	55.41	55.56
PGSC0003DMT400090198	Potato	mitochondrion	13.19	55.56
CDY00263	Canola	cytosol, nucleus, peroxisome	40.9	55.56
Solyc06g050110.1.1	Tomato	cytosol	53.03	55.37
AT5G51810.1	Thale cress	cytosol, nucleus, peroxisome	55.15	55.29
CDX81038	Canola	cytosol, nucleus, peroxisome	55.15	55.29
Bra005927.1-P	Field mustard	cytosol	47.49	55.21
CDX70015	Canola	cytosol, nucleus, peroxisome	55.15	55.15
CDX98998	Canola	cytosol, nucleus, peroxisome	55.15	55.15
Bra009285.1-P	Field mustard	cytosol	54.88	54.88
CDX99892	Canola	cytosol, nucleus, peroxisome	54.62	54.62
CDX99893	Canola	cytosol, nucleus, peroxisome	54.62	54.47
EER95912	Sorghum	cytosol	54.88	54.45
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	54.35	54.21
CDY00499	Canola	cytosol, nucleus, peroxisome	54.35	54.21
KRH65199	Soybean	cytosol	54.62	54.19
Bra028706.1-P	Field mustard	cytosol	54.09	54.09
CDY05017	Canola	cytosol, nucleus, peroxisome	54.09	54.09
CDY14054	Canola	cytosol, nucleus, peroxisome	53.83	53.83
AT5G07200.1	Thale cress	cytosol, nucleus, peroxisome	53.56	53.42
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	17.94	52.71
KRH48309	Soybean	cytosol	54.88	52.53
AT1G60980.1	Thale cress	cytosol, mitochondrion, peroxisome	51.98	52.39
Bra027106.1-P	Field mustard	cytosol	51.19	51.6
CDY13228	Canola	cytosol	10.03	51.35
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	25.59	51.05
PGSC0003DMT400088638	Potato	cytosol	33.51	50.2
CDY52529	Canola	cytosol, nucleus, peroxisome	49.87	49.61
Bra039251.1-P	Field mustard	cytosol	48.81	49.47
PGSC0003DMT400091526	Potato	cytosol	31.13	49.37
Bra010064.1-P	Field mustard	cytosol	49.08	49.34
CDY64867	Canola	cytosol	48.55	49.2
Bra031467.1-P	Field mustard	cytosol	46.7	46.95
CDY44829	Canola	cytosol	48.28	46.8
CDY60083	Canola	vacuole	49.08	46.27
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	15.3	46.03
CDY12880	Canola	cytosol, nucleus, vacuole	51.19	45.86
CDY64866	Canola	cytosol, nucleus, peroxisome	37.2	45.48
OQU87995	Sorghum	plastid	53.03	45.48
Solyc10g045770.1.1	Tomato	cytosol	12.4	43.12
Solyc10g046820.1.1	Tomato	cytosol, nucleus, peroxisome	22.16	42.64
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	12.14	40.71
PGSC0003DMT400089703	Potato	nucleus	16.09	40.67
CDY13227	Canola	cytosol	17.41	38.6
KXG38014	Sorghum	cytosol	27.97	30.72
OQU91363	Sorghum	cytosol	27.97	29.78
OQU78027	Sorghum	cytosol	38.79	29.52
EER91221	Sorghum	cytosol	26.65	29.45

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	EntrezGene:8061378	UniProt:C5WRX6	InterPro:DIOX_N	EnsemblPlants:EER90481
ProteinID:EER90481	ProteinID:EER90481.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006629	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009653	GO:GO:0009686	GO:GO:0009719
GO:GO:0009740	GO:GO:0009791	GO:GO:0009826	GO:GO:0009908	GO:GO:0009987	GO:GO:0016043
GO:GO:0016049	GO:GO:0016491	GO:GO:0040007	GO:GO:0045544	GO:GO:0046872	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140	EnsemblPlantsGene:SORBI_3001G005300	SUPFAM:SSF51197
unigene:Sbi.110	UniParc:UPI0001A82461	RefSeq:XP_002463483.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:450965..452825

Molecular Weight (calculated)

42580.3 Da

IEP (calculated)

6.318

GRAVY (calculated)

-0.399

Length

379 amino acids

Sequence
(BLAST)

001: MVQQASLGEP LLLQPPPPSL VFDAARLSGL SDIPQQFLWP ADESPTPDAA EELAVPLIDL SGDAAEVVRQ VRRACDLHGF FQVVNHGIDD ALLQEAHRCM
101: DAFFTLPMSD KQRAQRRQGD SCGYASSFTG RFASKLPWKE TLSFRYSDDQ GDGDVVVDYF VDKLGDAYRH HGEVYGRYCS EMSRLSLELM EVLGESLGVG
201: RRHFRRFFQG NDSIMRLNYY PPCQRPYDTL GTGPHCDPTS LTILHQDDVG GLQVFDAATG PGTGRWRSIR PHPGAFVVNI GDTFMALSNG RYRSCLHRAV
301: VNSRVPRRSL AFFLCPEMDK VVRPPAELVD DANPRAYPDF TWRTLLDFTM RHYRSDMRTL EAFSNWLNHG GHLSSPPPP

Best Arabidopsis Sequence Match ( AT5G51810.1 )
(BLAST)

001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI

Arabidopsis Description

GA20OX2Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39111]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.