CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70015	Canola	cytosol, nucleus, peroxisome	97.89	97.89
Bra009285.1-P	Field mustard	cytosol	97.63	97.63
CDX81038	Canola	cytosol, nucleus, peroxisome	89.18	89.42
CDY14054	Canola	cytosol, nucleus, peroxisome	88.65	88.65
CDY05017	Canola	cytosol, nucleus, peroxisome	88.39	88.39
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	87.86	88.1
AT5G07200.1	Thale cress	cytosol, nucleus, peroxisome	86.81	86.58
CDY72226	Canola	mitochondrion	46.44	67.95
CDY64867	Canola	cytosol	67.02	67.91
CDY00263	Canola	cytosol, nucleus, peroxisome	49.87	67.74
CDY64866	Canola	cytosol, nucleus, peroxisome	53.83	65.81
CDY12880	Canola	cytosol, nucleus, vacuole	71.5	64.07
CDY49714	Canola	cytosol, nucleus, peroxisome	58.84	63.71
CDY60083	Canola	vacuole	67.55	63.68
CDY44829	Canola	cytosol	65.44	63.43
CDY52529	Canola	cytosol, nucleus, peroxisome	62.27	61.94
CDY27101	Canola	cytosol, nucleus, peroxisome	61.48	61.8
CDX91609	Canola	cytosol, nucleus, peroxisome	60.69	60.85
CDX99892	Canola	cytosol, nucleus, peroxisome	60.69	60.69
CDX99893	Canola	cytosol, nucleus, peroxisome	60.69	60.53
CDY00499	Canola	cytosol, nucleus, peroxisome	60.42	60.26
CDY55723	Canola	cytosol, nucleus, peroxisome	59.1	59.57
CDX92707	Canola	cytosol, nucleus, peroxisome	59.89	59.27
PGSC0003DMT400000036	Potato	cytosol	56.73	58.9
Solyc01g093980.2.1	Tomato	cytosol	56.46	58.79
CDX94446	Canola	cytosol, nucleus, peroxisome	58.31	58.78
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	47.49	58.44
CDY13228	Canola	cytosol	11.35	58.11
VIT_15s0048g01320.t01	Wine grape	cytosol	58.84	58.07
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	47.49	57.51
HORVU5Hr1G124120.1	Barley	cytosol	54.35	57.22
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	54.35	57.06
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	54.09	56.16
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	54.35	56.13
KRH65199	Soybean	cytosol	56.46	56.02
EER90481	Sorghum	cytosol	55.15	55.15
KRH48309	Soybean	cytosol	56.99	54.55
GSMUA_AchrUn_...	Banana	cytosol	45.38	53.25
CDY13227	Canola	cytosol	23.75	52.63
Os03t0856700-02	Rice	cytosol, mitochondrion	50.92	51.88
TraesCS3D01G393900.1	Wheat	cytosol	48.55	51.69
TraesCS3A01G399800.1	Wheat	cytosol	48.55	51.4
TraesCS3B01G432800.1	Wheat	cytosol	48.02	50.56
Zm00001d034898_P001	Maize	plastid	53.83	50.49
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	47.76	50.42
Os07t0169700-01	Rice	plasma membrane	48.81	50.41
HORVU3Hr1G089980.2	Barley	cytosol	47.23	50.14
CDY71240	Canola	cytosol, peroxisome, plastid	32.98	46.82
EER95912	Sorghum	cytosol	46.97	46.6
Zm00001d007894_P001	Maize	cytosol	46.7	44.92
CDY70184	Canola	cytosol	34.56	40.18
CDY36334	Canola	cytosol	10.82	33.61
CDY69351	Canola	cytosol, peroxisome	19.53	32.74
CDX92296	Canola	cytosol, nucleus, peroxisome	27.97	30.37
CDY22994	Canola	cytosol	27.97	30.03
CDX82318	Canola	cytosol	27.97	30.03
CDX82317	Canola	cytosol	27.97	30.03
CDY22995	Canola	cytosol	27.97	30.03
CDX99287	Canola	cytoskeleton, cytosol, peroxisome	27.18	29.6
CDX99288	Canola	cytosol	27.18	29.26
CDX92294	Canola	cytosol	26.91	28.98

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:A0A078EI37	EnsemblPlants:CDX98998	ProteinID:CDX98998	ProteinID:CDX98998.1
InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00107120001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140
SUPFAM:SSF51197	UniParc:UPI0004EF0D3A	:	:	:	:

Description

BnaC09g48370D

Coordinates

chrLK031907:+:1071319..1073077

Molecular Weight (calculated)

43432.5 Da

IEP (calculated)

6.427

GRAVY (calculated)

-0.472

Length

379 amino acids

Sequence
(BLAST)

001: MAMECIATLP ERFNDNKTKE DPSIFDANLL NQLSNHIPQQ FVWPDHEKPS TDVQPLQAPL IDLAGFLSGD SFLVSEATRL VSEASKKHGF FLVTNHGVDE
101: TLLSRAYLFM DSFFKAPACE KQKAQRTWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KCQSQAVKDF VSKKMGDEYE NFGKVYQEYA DAMNILSLKI
201: MELLGMSLGI ERRHFRNFFE DNESILRLNY YPQCNQPELT LGTGPHCDPT SLTILHQDQV AGLQVYVDNK WQSIPPDPQA FVVNIGDTFM ALTNGIYKSC
301: LHRAVVNSER ERKTFAFFLC PKGDKMVKPP KELVGVTSGE RKYPDFTWST FLEFTQKHYR SDMNTLEEFS NWLKNRKSF

Best Arabidopsis Sequence Match ( AT5G07200.1 )
(BLAST)

001: MATECIATVP QIFSENKTKE DSSIFDAKLL NQHSHHIPQQ FVWPDHEKPS TDVQPLQVPL IDLAGFLSGD SCLASEATRL VSKAATKHGF FLITNHGVDE
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF

Arabidopsis Description

GA20OX3Gibberellin 20 oxidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q39112]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.