CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49714	Canola	cytosol, nucleus, peroxisome	86.95	95.14
CDY55723	Canola	cytosol, nucleus, peroxisome	84.86	86.44
CDX94446	Canola	cytosol, nucleus, peroxisome	84.33	85.9
AT4G25420.1	Thale cress	cytosol, nucleus, peroxisome	84.33	85.68
CDY72226	Canola	mitochondrion	50.13	74.13
CDY27101	Canola	cytosol, nucleus, peroxisome	72.32	73.47
CDX91609	Canola	cytosol, nucleus, peroxisome	72.32	73.28
CDX99892	Canola	cytosol, nucleus, peroxisome	71.02	71.77
CDX99893	Canola	cytosol, nucleus, peroxisome	71.02	71.58
CDY00499	Canola	cytosol, nucleus, peroxisome	71.02	71.58
VIT_15s0048g01320.t01	Wine grape	cytosol	64.23	64.06
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	59.27	62.88
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	50.65	61.98
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	61.1	61.9
CDX81038	Canola	cytosol, nucleus, peroxisome	61.1	61.9
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	59.27	61.85
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	49.61	61.69
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	58.75	61.64
CDY00263	Canola	cytosol, nucleus, peroxisome	44.65	61.29
PGSC0003DMT400000036	Potato	cytosol	58.22	61.1
Solyc01g093980.2.1	Tomato	cytosol	57.96	60.99
HORVU5Hr1G124120.1	Barley	cytosol	57.18	60.83
CDX70015	Canola	cytosol, nucleus, peroxisome	59.53	60.16
CDX98998	Canola	cytosol, nucleus, peroxisome	59.27	59.89
CDY13228	Canola	cytosol	11.49	59.46
CDY14054	Canola	cytosol, nucleus, peroxisome	58.49	59.1
CDY05017	Canola	cytosol, nucleus, peroxisome	58.49	59.1
KRH65199	Soybean	cytosol	58.22	58.38
EER90481	Sorghum	cytosol	57.44	58.05
KRH48309	Soybean	cytosol	59.53	57.58
Os03t0856700-02	Rice	cytosol, mitochondrion	55.35	56.99
GSMUA_AchrUn_...	Banana	cytosol	46.74	55.42
CDY52529	Canola	cytosol, nucleus, peroxisome	55.09	55.38
CDY64867	Canola	cytosol	53.52	54.81
Zm00001d034898_P001	Maize	plastid	57.18	54.21
HORVU3Hr1G089980.2	Barley	cytosol	47.52	50.98
TraesCS3D01G393900.1	Wheat	cytosol	47.26	50.84
CDY60083	Canola	vacuole	53.26	50.75
Os07t0169700-01	Rice	plasma membrane	48.56	50.68
CDY64866	Canola	cytosol, nucleus, peroxisome	40.99	50.65
CDY12880	Canola	cytosol, nucleus, vacuole	55.87	50.59
TraesCS3A01G399800.1	Wheat	cytosol	47.26	50.56
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	47.26	50.42
CDY44829	Canola	cytosol	51.17	50.13
TraesCS3B01G432800.1	Wheat	cytosol	47.0	50.0
EER95912	Sorghum	cytosol	46.48	46.6
Zm00001d007894_P001	Maize	cytosol	46.48	45.18
CDY13227	Canola	cytosol	19.84	44.44
CDY71240	Canola	cytosol, peroxisome, plastid	30.55	43.82
CDY70184	Canola	cytosol	32.11	37.73
CDY36334	Canola	cytosol	10.18	31.97
CDX99287	Canola	cytoskeleton, cytosol, peroxisome	28.98	31.9
CDY69351	Canola	cytosol, peroxisome	18.8	31.86
CDX92296	Canola	cytosol, nucleus, peroxisome	28.46	31.23
CDY22994	Canola	cytosol	27.42	29.75
CDY22995	Canola	cytosol	27.42	29.75
CDX82318	Canola	cytosol	27.42	29.75
CDX82317	Canola	cytosol	27.42	29.75
CDX99288	Canola	cytosol	25.33	27.56
CDX92294	Canola	cytosol	25.07	27.27

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:A0A078DUZ2	EnsemblPlants:CDX92707	ProteinID:CDX92707	ProteinID:CDX92707.1
InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00154521001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140
SUPFAM:SSF51197	UniParc:UPI0004EE9E7F	:	:	:	:

Description

BnaC07g39650D

Coordinates

chrLK031873:-:414569..416026

Molecular Weight (calculated)

43542.6 Da

IEP (calculated)

5.144

GRAVY (calculated)

-0.429

Length

383 amino acids

Sequence
(BLAST)

001: MVSCVTTSPQ EEDTPKLDLG NIQRPPIFNP SMLNLQATIP NQFIWPDDEK PCTEAPELDV PLIDLQNFLS ASSSPSATLE ASRLISEACS KHGFFLVVNH
101: GISEELISDA HECMARFFDM PPSEKQKVQR KPGESCGYAS SFTGRFSTKL PWKETLSFRF CDDKNSPNTV QDYFCDALGH ELEPLGKVYQ EYCEAMSSLS
201: LKIMELLGLS LGVSRDYFRE FFEENDSIMR LNYYPPCQKP DLTLGTGPHC DPTSLTILHQ DNVNGLQVFV ENQWRSISPN PKAFVVNIGD TFMALSNNRY
301: MSCLHRAVVN SQSERKSLAF FLCPNKDRVV KPPRELLDSN APRRYPDFTW SMLLEFTQKH YRADMNTLQA FSDWLIPRSP SNK

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.