CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	100.0	100.0
CDX99893	Canola	cytosol, nucleus, peroxisome	99.21	99.21
CDX99892	Canola	cytosol, nucleus, peroxisome	98.95	99.21
CDY72226	Canola	mitochondrion	66.58	97.68
CDY27101	Canola	cytosol, nucleus, peroxisome	88.95	89.66
AT5G51810.1	Thale cress	cytosol, nucleus, peroxisome	88.95	89.42
CDX91609	Canola	cytosol, nucleus, peroxisome	88.68	89.15
CDY49714	Canola	cytosol, nucleus, peroxisome	66.58	72.29
CDY55723	Canola	cytosol, nucleus, peroxisome	70.79	71.54
CDX92707	Canola	cytosol, nucleus, peroxisome	71.58	71.02
CDX94446	Canola	cytosol, nucleus, peroxisome	70.0	70.74
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	49.74	61.36
VIT_15s0048g01320.t01	Wine grape	cytosol	61.58	60.94
CDX98998	Canola	cytosol, nucleus, peroxisome	60.26	60.42
CDX70015	Canola	cytosol, nucleus, peroxisome	60.26	60.42
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	49.74	60.38
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	60.0	60.32
CDY05017	Canola	cytosol, nucleus, peroxisome	60.0	60.16
CDX81038	Canola	cytosol, nucleus, peroxisome	59.74	60.05
CDY14054	Canola	cytosol, nucleus, peroxisome	59.74	59.89
Solyc01g093980.2.1	Tomato	cytosol	57.11	59.62
PGSC0003DMT400000036	Potato	cytosol	56.84	59.18
CDY00263	Canola	cytosol, nucleus, peroxisome	43.42	59.14
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	55.53	58.45
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	55.53	57.81
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	55.53	57.49
HORVU5Hr1G124120.1	Barley	cytosol	54.21	57.22
KRH65199	Soybean	cytosol	57.11	56.81
KRH48309	Soybean	cytosol	57.89	55.56
GSMUA_AchrUn_...	Banana	cytosol	47.11	55.42
CDY64867	Canola	cytosol	53.68	54.55
EER90481	Sorghum	cytosol	54.21	54.35
CDY52529	Canola	cytosol, nucleus, peroxisome	54.47	54.33
Os03t0856700-02	Rice	cytosol, mitochondrion	51.58	52.69
CDY64866	Canola	cytosol, nucleus, peroxisome	42.37	51.94
CDY13228	Canola	cytosol	10.0	51.35
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	48.42	51.25
TraesCS3A01G399800.1	Wheat	cytosol	48.16	51.12
HORVU3Hr1G089980.2	Barley	cytosol	47.89	50.98
TraesCS3D01G393900.1	Wheat	cytosol	47.63	50.84
TraesCS3B01G432800.1	Wheat	cytosol	48.16	50.83
Zm00001d034898_P001	Maize	plastid	53.95	50.74
CDY12880	Canola	cytosol, nucleus, vacuole	55.79	50.12
CDY60083	Canola	vacuole	52.89	50.0
CDY44829	Canola	cytosol	51.32	49.87
Os07t0169700-01	Rice	plasma membrane	48.16	49.86
EER95912	Sorghum	cytosol	47.89	47.64
CDY13227	Canola	cytosol	21.05	46.78
Zm00001d007894_P001	Maize	cytosol	47.11	45.43
CDY71240	Canola	cytosol, peroxisome, plastid	30.26	43.07
CDY70184	Canola	cytosol	31.32	36.5
CDY36334	Canola	cytosol	10.26	31.97
CDY69351	Canola	cytosol, peroxisome	18.42	30.97
CDX99287	Canola	cytoskeleton, cytosol, peroxisome	27.63	30.17
CDX92296	Canola	cytosol, nucleus, peroxisome	27.37	29.8
CDX82317	Canola	cytosol	27.63	29.75
CDY22995	Canola	cytosol	27.63	29.75
CDY22994	Canola	cytosol	27.63	29.75
CDX82318	Canola	cytosol	27.63	29.75
CDX99288	Canola	cytosol	25.53	27.56
CDX92294	Canola	cytosol	25.53	27.56

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:A0A078EIA0	EnsemblPlants:CDY00499	ProteinID:CDY00499	ProteinID:CDY00499.1
InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00110217001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140
SUPFAM:SSF51197	UniParc:UPI0002543BAC	SEG:seg	:	:	:

Description

BnaA10g07740D

Coordinates

chrLK031919:-:780800..782197

Molecular Weight (calculated)

43295.4 Da

IEP (calculated)

5.628

GRAVY (calculated)

-0.366

Length

380 amino acids

Sequence
(BLAST)

001: MAIICTTPTT SPAEKEQEPK QDLENDQTPP LIFNPSLLNV QSQIPNQFIW PDKEKPSIDI PELNVPFIDL SSQDTTLEAS RLIAEACTKH GFFLVVNHGV
101: SESLISDAHR YMESFFDMPL AGKQRAQRKP GESWGYASSF TGRFSTKLPW KETLSFPFSN EISGSRTVQD YFSGTLGQEF EQFGRVYQNY CEAMSSLSLE
201: IMELLGLSLG IKTDHFREFF EENDSIMRLN HYPPCQTPDL TLGTGPHCDP SSLTILHQDQ VNGLQVFVEN QWQSILPNPK AFVVNIGDTF MALSNGIFKS
301: CLHRAVVNRE SARTSMAFFL CPKKDKVVKP PSKILEKMTP RRYPDFTWPM FLEFTQKHYR ADVNTLDSFT NWIITNKFTV

Best Arabidopsis Sequence Match ( AT5G51810.1 )
(BLAST)

001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI

Arabidopsis Description

GA20OX2Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39111]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.