CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, endoplasmic reticulum, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005927.1-P	Field mustard	cytosol	84.39	97.85
CDX81038	Canola	cytosol, nucleus, peroxisome	97.35	97.35
CDX70015	Canola	cytosol, nucleus, peroxisome	88.36	88.13
CDX98998	Canola	cytosol, nucleus, peroxisome	88.1	87.86
CDY14054	Canola	cytosol, nucleus, peroxisome	87.3	87.07
CDY05017	Canola	cytosol, nucleus, peroxisome	86.24	86.02
AT5G07200.1	Thale cress	cytosol, nucleus, peroxisome	86.24	85.79
CDY72226	Canola	mitochondrion	46.83	68.34
CDY64867	Canola	cytosol	66.93	67.65
CDY49714	Canola	cytosol, nucleus, peroxisome	60.58	65.43
CDY64866	Canola	cytosol, nucleus, peroxisome	53.44	65.16
CDY00263	Canola	cytosol, nucleus, peroxisome	47.88	64.87
CDY60083	Canola	vacuole	67.46	63.43
CDY12880	Canola	cytosol, nucleus, vacuole	69.84	62.41
CDY44829	Canola	cytosol	64.02	61.89
CDY27101	Canola	cytosol, nucleus, peroxisome	61.64	61.8
CDX92707	Canola	cytosol, nucleus, peroxisome	61.9	61.1
CDY55723	Canola	cytosol, nucleus, peroxisome	60.58	60.9
CDY52529	Canola	cytosol, nucleus, peroxisome	61.38	60.89
CDX91609	Canola	cytosol, nucleus, peroxisome	60.85	60.85
CDX99892	Canola	cytosol, nucleus, peroxisome	60.58	60.42
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	49.21	60.39
CDX99893	Canola	cytosol, nucleus, peroxisome	60.58	60.26
CDX94446	Canola	cytosol, nucleus, peroxisome	59.79	60.11
CDY00499	Canola	cytosol, nucleus, peroxisome	60.32	60.0
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	49.47	59.74
PGSC0003DMT400000036	Potato	cytosol	56.88	58.9
Solyc01g093980.2.1	Tomato	cytosol	56.61	58.79
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	56.08	58.73
HORVU5Hr1G124120.1	Barley	cytosol	55.56	58.33
VIT_15s0048g01320.t01	Wine grape	cytosol	58.99	58.07
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	55.82	57.81
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	56.08	57.77
KRH65199	Soybean	cytosol	56.61	56.02
EER90481	Sorghum	cytosol	55.82	55.67
CDY13228	Canola	cytosol	10.85	55.41
KRH48309	Soybean	cytosol	57.41	54.8
Os03t0856700-02	Rice	cytosol, mitochondrion	53.44	54.3
GSMUA_AchrUn_...	Banana	cytosol	45.77	53.56
CDY13227	Canola	cytosol	23.55	52.05
Zm00001d034898_P001	Maize	plastid	54.76	51.24
TraesCS3D01G393900.1	Wheat	cytosol	47.88	50.84
TraesCS3A01G399800.1	Wheat	cytosol	47.62	50.28
HORVU3Hr1G089980.2	Barley	cytosol	47.35	50.14
TraesCS3B01G432800.1	Wheat	cytosol	47.62	50.0
Os07t0169700-01	Rice	plasma membrane	48.41	49.86
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	47.35	49.86
CDY71240	Canola	cytosol, peroxisome, plastid	33.86	47.94
EER95912	Sorghum	cytosol	46.3	45.81
Zm00001d007894_P001	Maize	cytosol	46.3	44.42
CDY70184	Canola	cytosol	34.92	40.49
CDY36334	Canola	cytosol	11.11	34.43
CDY69351	Canola	cytosol, peroxisome	19.58	32.74
CDX92296	Canola	cytosol, nucleus, peroxisome	27.51	29.8
CDX99287	Canola	cytoskeleton, cytosol, peroxisome	27.25	29.6
CDX99288	Canola	cytosol	26.98	28.98
CDY22995	Canola	cytosol	26.98	28.9
CDY22994	Canola	cytosol	26.98	28.9
CDX82318	Canola	cytosol	26.98	28.9
CDX82317	Canola	cytosol	26.98	28.9
CDX92294	Canola	cytosol	26.72	28.69

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:A0A078J6M5	UniProt:A0A078J6M5	EnsemblPlants:CDY58871	ProteinID:CDY58871
ProteinID:CDY58871.1	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00025278001	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682
PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140	SUPFAM:SSF51197	UniParc:UPI0004EE10B5	:

Description

BnaA03g55500DBnaA03g55500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6M5]

Coordinates

chrLK033708:+:946..2541

Molecular Weight (calculated)

43157.1 Da

IEP (calculated)

6.017

GRAVY (calculated)

-0.441

Length

378 amino acids

Sequence
(BLAST)

001: MAMECIATRP QRFNENKTEE DPSNFDANLL NQQSNHIPQQ FVWPDHEKPT DDVQPLQVPL IDLAGFLSGD SVLVSEATRL VSEASKKHGF FLVTNHGIDE
101: TLLSRAYLFM DSFFKAPACE KQKAQKTWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPVE KCHSQTVKDF VSEKMGYGYE ELGKVYQEYA EAMNILSLKI
201: MELLGMSLGI VRRHFREFFE DNDSILRLNY YPQCKQPDLA LGTGPHCDPT SLTILHQDQV GGLQVFVDNR WQSIPPSPKA VVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSES ERKSFAFFLC PKGDKVLKPP EELAGVISER EYPDFTWSTF LEFTQKHYRA DMNTLEEFSN WLKNSRSF

Best Arabidopsis Sequence Match ( AT5G07200.1 )
(BLAST)

001: MATECIATVP QIFSENKTKE DSSIFDAKLL NQHSHHIPQQ FVWPDHEKPS TDVQPLQVPL IDLAGFLSGD SCLASEATRL VSKAATKHGF FLITNHGVDE
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF

Arabidopsis Description

GA20OX3Gibberellin 20 oxidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q39112]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.