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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • peroxisome 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY55723 Canola cytosol, nucleus, peroxisome 97.87 97.87
CDY49714 Canola cytosol, nucleus, peroxisome 82.18 88.29
CDX92707 Canola cytosol, nucleus, peroxisome 85.9 84.33
AT4G25420.1 Thale cress cytosol, nucleus, peroxisome 84.31 84.08
CDY72226 Canola mitochondrion 50.8 73.75
CDY27101 Canola cytosol, nucleus, peroxisome 71.81 71.62
CDX91609 Canola cytosol, nucleus, peroxisome 71.81 71.43
CDX99892 Canola cytosol, nucleus, peroxisome 70.74 70.18
CDY00499 Canola cytosol, nucleus, peroxisome 70.74 70.0
CDX99893 Canola cytosol, nucleus, peroxisome 70.74 70.0
VIT_15s0048g01320.t01 Wine grape cytosol 65.96 64.58
GSMUA_Achr8P19120_001 Banana cytosol, extracellular, peroxisome 50.53 61.69
PGSC0003DMT400000036 Potato cytosol 59.04 60.82
Solyc01g093980.2.1 Tomato cytosol 58.78 60.71
GSMUA_Achr2P01010_001 Banana cytosol, peroxisome, plastid 50.53 60.7
TraesCS5D01G566200.1 Wheat cytosol, peroxisome, plastid 57.45 59.83
CDY58871 Canola cytosol, endoplasmic reticulum, peroxisome 60.11 59.79
CDX81038 Canola cytosol, nucleus, peroxisome 59.84 59.52
HORVU5Hr1G124120.1 Barley cytosol 56.65 59.17
TraesCS5B01G560300.1 Wheat cytosol, peroxisome, plastid 57.71 59.13
CDY00263 Canola cytosol, nucleus, peroxisome 43.62 58.78
KRH65199 Soybean cytosol 59.57 58.64
TraesCS4A01G319100.1 Wheat cytosol, peroxisome, plastid 56.91 58.63
CDX98998 Canola cytosol, nucleus, peroxisome 58.78 58.31
CDX70015 Canola cytosol, nucleus, peroxisome 58.78 58.31
CDY13228 Canola cytosol 11.44 58.11
CDY14054 Canola cytosol, nucleus, peroxisome 58.51 58.05
CDY05017 Canola cytosol, nucleus, peroxisome 58.51 58.05
KRH48309 Soybean cytosol 60.37 57.32
EER90481 Sorghum cytosol 57.18 56.73
Os03t0856700-02 Rice cytosol, mitochondrion 55.85 56.45
GSMUA_AchrUn_... Banana cytosol 48.4 56.35
CDY64867 Canola cytosol 53.99 54.28
CDY52529 Canola cytosol, nucleus, peroxisome 53.99 53.28
Zm00001d034898_P001 Maize plastid 56.91 52.97
HORVU3Hr1G089980.2 Barley cytosol 48.94 51.54
TraesCS3D01G394000.1 Wheat cytosol, peroxisome, plastid 49.2 51.53
TraesCS3D01G393900.1 Wheat cytosol 48.67 51.4
TraesCS3A01G399800.1 Wheat cytosol 48.67 51.12
TraesCS3B01G432800.1 Wheat cytosol 48.94 51.11
CDY12880 Canola cytosol, nucleus, vacuole 56.65 50.35
Os07t0169700-01 Rice plasma membrane 48.67 49.86
CDY60083 Canola vacuole 52.93 49.5
CDY64866 Canola cytosol, nucleus, peroxisome 40.69 49.35
CDY44829 Canola cytosol 50.8 48.85
EER95912 Sorghum cytosol 47.07 46.34
Zm00001d007894_P001 Maize cytosol 47.07 44.92
CDY71240 Canola cytosol, peroxisome, plastid 30.05 42.32
CDY13227 Canola cytosol 19.15 42.11
CDY70184 Canola cytosol 31.38 36.2
CDY69351 Canola cytosol, peroxisome 18.88 31.42
CDX99287 Canola cytoskeleton, cytosol, peroxisome 28.19 30.46
CDX92296 Canola cytosol, nucleus, peroxisome 28.19 30.37
CDY36334 Canola cytosol 9.84 30.33
CDY22994 Canola cytosol 28.46 30.31
CDY22995 Canola cytosol 28.46 30.31
CDX82318 Canola cytosol 28.46 30.31
CDX82317 Canola cytosol 28.46 30.31
CDX99288 Canola cytosol 26.6 28.41
CDX92294 Canola cytosol 26.33 28.12
Protein Annotations
MapMan:11.6.1.5Gene3D:2.60.120.330GO:A0A078DZ11EnsemblPlants:CDX94446ProteinID:CDX94446ProteinID:CDX94446.1
InterPro:DIOX_NGO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0016491
GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00157601001InterPro:IPNS-likeInterPro:IPR005123InterPro:IPR027443InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171PFAM:PF14226PRINTS:PR00682PFscan:PS51471PANTHER:PTHR10209PANTHER:PTHR10209:SF140
SUPFAM:SSF51197UniParc:UPI0004EF3FF7::::
Description
BnaC01g17380D
Coordinates
chrLK031881:+:1274907..1276458
Molecular Weight (calculated)
43075.2 Da
IEP (calculated)
6.503
GRAVY (calculated)
-0.382
Length
376 amino acids
Sequence
(BLAST)
001: MAASCVITSP EEEHTPKLDL VTPLVFNPSM LNLQATIPSQ FIWPDDEKPC LEAPELDVPL IDLQNFLAHS HSTLDASRLI SDACNKHGFF LVVNHGISEQ
101: LISDAHEYMS RFFDMPLSEK QRIQRKAGQS CGYASSFTGR FSTKLPWKET LSFQFCDDKS RPKNVQDYFC DALGHEFEPF GKVYQEYCEA MSSLSLKIME
201: LLGISLGVSG DYFKSFFEEN DSIMRLNYYP PCQKPDLTFG TGPHCDPTSL TILHQDHVHG LQVFVDNQWR SISPNPKAFV VNIGDTFMAL SNNRYKSCLH
301: RAVVNSKSER KSLAFFLCPK KDRVVKPPRE LLDSNTPRRY PDFTWSMLLE FTQKHYRADM HTLQAFTDWL TNKPIQ
Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)
001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI
Arabidopsis Description
GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.