CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99892	Canola	cytosol, nucleus, peroxisome	98.84	67.55
CDX99893	Canola	cytosol, nucleus, peroxisome	98.84	67.37
CDY00499	Canola	cytosol, nucleus, peroxisome	97.68	66.58
CDY27101	Canola	cytosol, nucleus, peroxisome	89.58	61.54
CDX91609	Canola	cytosol, nucleus, peroxisome	89.58	61.38
AT5G51810.1	Thale cress	cytosol, nucleus, peroxisome	88.8	60.85
CDY00263	Canola	cytosol, nucleus, peroxisome	62.16	57.71
CDY49714	Canola	cytosol, nucleus, peroxisome	74.9	55.43
CDY13228	Canola	cytosol	14.67	51.35
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	61.0	51.3
CDY55723	Canola	cytosol, nucleus, peroxisome	74.13	51.06
CDX94446	Canola	cytosol, nucleus, peroxisome	73.75	50.8
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	60.62	50.16
CDX92707	Canola	cytosol, nucleus, peroxisome	74.13	50.13
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	68.34	46.83
VIT_15s0048g01320.t01	Wine grape	cytosol	69.11	46.61
CDX81038	Canola	cytosol, nucleus, peroxisome	67.95	46.56
CDX70015	Canola	cytosol, nucleus, peroxisome	67.95	46.44
CDX98998	Canola	cytosol, nucleus, peroxisome	67.95	46.44
Solyc01g093980.2.1	Tomato	cytosol	64.86	46.15
GSMUA_AchrUn_...	Banana	cytosol	57.53	46.13
PGSC0003DMT400000036	Potato	cytosol	64.48	45.75
CDY05017	Canola	cytosol, nucleus, peroxisome	66.8	45.65
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	62.55	44.88
CDY14054	Canola	cytosol, nucleus, peroxisome	65.64	44.85
HORVU5Hr1G124120.1	Barley	cytosol	61.78	44.44
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	62.55	44.38
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	62.55	44.14
KRH65199	Soybean	cytosol	64.86	43.98
KRH48309	Soybean	cytosol	66.02	43.18
EER90481	Sorghum	cytosol	61.78	42.22
CDY52529	Canola	cytosol, nucleus, peroxisome	61.78	41.99
CDY64867	Canola	cytosol	59.85	41.44
Os03t0856700-02	Rice	cytosol, mitochondrion	59.46	41.4
HORVU3Hr1G089980.2	Barley	cytosol	55.6	40.34
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	55.6	40.11
TraesCS3B01G432800.1	Wheat	cytosol	55.6	40.0
TraesCS3A01G399800.1	Wheat	cytosol	55.21	39.94
TraesCS3D01G393900.1	Wheat	cytosol	54.44	39.61
Zm00001d034898_P001	Maize	plastid	61.78	39.6
Os07t0169700-01	Rice	plasma membrane	55.21	38.96
CDY12880	Canola	cytosol, nucleus, vacuole	62.93	38.53
CDY60083	Canola	vacuole	59.07	38.06
EER95912	Sorghum	cytosol	55.21	37.43
CDY44829	Canola	cytosol	56.37	37.34
CDY64866	Canola	cytosol, nucleus, peroxisome	43.63	36.45
Zm00001d007894_P001	Maize	cytosol	54.44	35.79
CDY69351	Canola	cytosol, peroxisome	27.41	31.42
CDY71240	Canola	cytosol, peroxisome, plastid	30.89	29.96
CDY70184	Canola	cytosol	32.43	25.77
CDX99287	Canola	cytoskeleton, cytosol, peroxisome	32.05	23.85
CDX82317	Canola	cytosol	31.66	23.23
CDX82318	Canola	cytosol	31.66	23.23
CDY22995	Canola	cytosol	31.66	23.23
CDY22994	Canola	cytosol	31.66	23.23
CDX92296	Canola	cytosol, nucleus, peroxisome	30.89	22.92
CDX92294	Canola	cytosol	30.12	22.16
CDX99288	Canola	cytosol	30.12	22.16
CDY13227	Canola	cytosol	12.74	19.3
CDY36334	Canola	cytosol	2.32	4.92

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:A0A078K327	UniProt:A0A078K327	EnsemblPlants:CDY72226	ProteinID:CDY72226
ProteinID:CDY72226.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00025818001	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140
SUPFAM:SSF51197	UniParc:UPI0004EE1E4D	SEG:seg	:	:	:

Description

BnaCnng76580DBnaCnng76580D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K327]

Coordinates

chrLK049654:+:1..1034

Molecular Weight (calculated)

29755.4 Da

IEP (calculated)

7.886

GRAVY (calculated)

-0.401

Length

259 amino acids

Sequence
(BLAST)

001: GKQRAQRKPG ESWGYASSFT GRFSTKLPWK ETLSFPFSNE ISGSRTVQDY FSGTLGQEFE QFGRVYQNYC EAMSSLSLEI MELLGLSLGI KKDHFREFFE
101: ENDSIMRLNH YPPCQTPDLT LGTGPHCDPS SLTILHQDQV NGLQVFVDNQ WQSILPNPKA FVVNIGDTFM ALSNGIFKSC LHRAVVNRES ARTSMAFFLC
201: PKRDKVVKPP SEILEKMTPR RYPDFTWPMF LEFTQKLYRA DVNTLDSFTN WIITNKFPV

Best Arabidopsis Sequence Match ( AT1G60980.1 )
(BLAST)

001: MECIIKLPQR FNKNKSKKNP LRIFDSTVLN HQPDHIPQEF VWPDHEKPSK NVPILQVPVI DLAGFLSNDP LLVSEAERLV SEAAKKHGFF LVTNHGVDER
101: LLSTAHKLMD TFFKSPNYEK LKAQRKVGET TGYASSFVGR FKENLPWKET LSFSFSPTEK SENYSQTVKN YISKTMGDGY KDFGSVYQEY AETMSNLSLK
201: IMELLGMSLG IKREHFREFF EDNESIFRLN YYPKCKQPDL VLGTGPHCDP TSLTILQQDQ VSGLQVFVDN QWQSIPPIPQ ALVVNIGDTL MALTNGIYKS
301: CLHRAVVNGE TTRKTLAFFL CPKVDKVVKP PSELEGERAY PDFTWSMFLE FTMKHYRADM NTLEEFTNWL KNKGSF

Arabidopsis Description

GA20OX4Gibberellin 20 oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C955]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.