Factsheet for Solyc01g093980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000036	Potato	cytosol	95.88	95.62
VIT_15s0048g01320.t01	Wine grape	cytosol	69.23	65.62
CDY72226	Canola	mitochondrion	46.15	64.86
CDY49714	Canola	cytosol, nucleus, peroxisome	61.54	64.0
Bra019165.1-P	Field mustard	cytosol	61.26	63.71
Solyc03g006880.2.1	Tomato	cytosol	65.93	63.49
Solyc06g035530.2.1	Tomato	cytosol	63.46	62.1
Solyc11g072310.1.1	Tomato	cytosol	64.01	61.48
Solyc09g009110.2.1	Tomato	cytosol	63.19	60.85
KRH65199	Soybean	cytosol	63.74	60.73
Solyc06g050110.1.1	Tomato	cytosol	59.34	59.5
CDY27101	Canola	cytosol, nucleus, peroxisome	61.54	59.42
Bra022565.1-P	Field mustard	cytosol	61.26	59.15
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	50.0	59.09
CDY55723	Canola	cytosol, nucleus, peroxisome	60.99	59.04
Bra013890.1-P	Field mustard	cytosol	60.71	58.78
CDX94446	Canola	cytosol, nucleus, peroxisome	60.71	58.78
CDX91609	Canola	cytosol, nucleus, peroxisome	60.99	58.73
AT4G25420.1	Thale cress	cytosol, nucleus, peroxisome	60.71	58.62
AT1G60980.1	Thale cress	cytosol, mitochondrion, peroxisome	60.44	58.51
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	57.97	58.45
HORVU5Hr1G124120.1	Barley	cytosol	57.69	58.33
AT5G51810.1	Thale cress	cytosol, nucleus, peroxisome	60.44	58.2
CDX92707	Canola	cytosol, nucleus, peroxisome	60.99	57.96
KRH48309	Soybean	cytosol	62.91	57.83
CDX99892	Canola	cytosol, nucleus, peroxisome	59.89	57.52
CDX99893	Canola	cytosol, nucleus, peroxisome	59.89	57.37
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	57.42	57.26
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	49.18	57.19
AT5G07200.1	Thale cress	cytosol, nucleus, peroxisome	59.62	57.11
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	59.62	57.11
CDY00499	Canola	cytosol, nucleus, peroxisome	59.62	57.11
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	57.42	56.95
Bra005927.1-P	Field mustard	cytosol	50.82	56.75
CDX81038	Canola	cytosol, nucleus, peroxisome	58.79	56.61
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	58.79	56.61
CDX98998	Canola	cytosol, nucleus, peroxisome	58.79	56.46
CDY05017	Canola	cytosol, nucleus, peroxisome	58.79	56.46
CDX70015	Canola	cytosol, nucleus, peroxisome	58.79	56.46
Bra009285.1-P	Field mustard	cytosol	58.52	56.2
CDY14054	Canola	cytosol, nucleus, peroxisome	58.24	55.94
Bra028706.1-P	Field mustard	cytosol	58.24	55.94
EER90481	Sorghum	cytosol	57.97	55.67
CDY00263	Canola	cytosol, nucleus, peroxisome	42.03	54.84
Bra027106.1-P	Field mustard	cytosol	56.59	54.79
Os03t0856700-02	Rice	cytosol, mitochondrion	55.22	54.03
GSMUA_AchrUn_...	Banana	cytosol	47.8	53.87
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	28.02	53.68
Bra039251.1-P	Field mustard	cytosol	54.4	52.94
CDY64867	Canola	cytosol	54.4	52.94
Solyc10g045770.1.1	Tomato	cytosol	15.66	52.29
Zm00001d034898_P001	Maize	plastid	57.69	51.98
HORVU3Hr1G089980.2	Barley	cytosol	50.55	51.54
Bra031467.1-P	Field mustard	cytosol	53.3	51.46
TraesCS3D01G393900.1	Wheat	cytosol	50.27	51.4
CDY52529	Canola	cytosol, nucleus, peroxisome	53.3	50.92
TraesCS3A01G399800.1	Wheat	cytosol	49.73	50.56
Bra010064.1-P	Field mustard	cytosol	52.2	50.4
CDY64866	Canola	cytosol, nucleus, peroxisome	42.86	50.32
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	48.9	49.58
TraesCS3B01G432800.1	Wheat	cytosol	48.9	49.44
Os07t0169700-01	Rice	plasma membrane	49.73	49.32
CDY12880	Canola	cytosol, nucleus, vacuole	56.59	48.7
CDY60083	Canola	vacuole	53.57	48.51
CDY44829	Canola	cytosol	51.65	48.08
EER95912	Sorghum	cytosol	48.08	45.81
Solyc11g013360.1.1	Tomato	cytosol	42.58	44.93
Zm00001d007894_P001	Maize	cytosol	48.63	44.92
Solyc10g046820.1.1	Tomato	cytosol, nucleus, peroxisome	23.63	43.65
Solyc09g042210.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	15.38	43.08
Solyc09g018420.1.1	Tomato	cytosol	11.54	40.38
Solyc01g108860.2.1	Tomato	cytosol	28.57	29.63
Solyc01g108880.2.1	Tomato	cytosol, extracellular	28.02	29.14
Solyc12g013780.1.1	Tomato	cytosol	27.75	27.08

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	UniProt:B2MWW5	InterPro:DIOX_N	EMBL:EU652334	EMBL:EU675629
EMBL:EU675630	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006629
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009416	GO:GO:0009628	GO:GO:0009653	GO:GO:0009686	GO:GO:0009719	GO:GO:0009740
GO:GO:0009791	GO:GO:0009826	GO:GO:0009908	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049
GO:GO:0016491	GO:GO:0040007	GO:GO:0045544	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682
PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF358	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc01g093980.2	EnsemblPlants:Solyc01g093980.2.1
UniParc:UPI0001741DF0	SEG:seg	:	:	:	:

Description

Gibberellin 20-oxidase 4 [Source:UniProtKB/TrEMBL;Acc:B2MWW5]

Coordinates

chr1:+:85556502..85558519

Molecular Weight (calculated)

41962.1 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.391

Length

364 amino acids

Sequence
(BLAST)

001: MHDERQNDEE TSLVFDFLAN NSNIPPQFIW PDDEKPCPQP PPLLHVPPID LNGYLSGDPL AVSNATRLVN EACRKHGFFL VVNHGIDTKL INEAHKNMDF
101: FFGKPLVEKE KAKRKVGDYC GYASSFTSRF SCNLPWKETL SFRYSAELPF SHHIVQNYIL NVMGQEYTHF GDVYQKYCEE MSKLSLSVME LLGESIGVGR
201: SYFREFFEEN DSIMRLNYYP ICQKPDLTLG TGPHCDPTSL TILHQDDVGG LEVFVDDKWH SIPTNTNAFV VNIGDTFMVM SNGTYKSCLH RAIVNCRRTR
301: KSLAFFLCPK QDKIVSPPKE LITKNLPRKF PDFTWPLFLE FTQKHYRADK NTLDAFVHWL LHKT

Best Arabidopsis Sequence Match ( AT5G07200.1 )
(BLAST)

001: MATECIATVP QIFSENKTKE DSSIFDAKLL NQHSHHIPQQ FVWPDHEKPS TDVQPLQVPL IDLAGFLSGD SCLASEATRL VSKAATKHGF FLITNHGVDE
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF

Arabidopsis Description

GA20OX3Gibberellin 20 oxidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q39112]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.