Factsheet for Bra019165.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49714	Canola	cytosol, nucleus, peroxisome	99.71	99.71
Bra013890.1-P	Field mustard	cytosol	88.0	81.91
AT4G25420.1	Thale cress	cytosol, nucleus, peroxisome	85.71	79.58
Bra022565.1-P	Field mustard	cytosol	74.86	69.5
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	72.0	66.32
VIT_15s0048g01320.t01	Wine grape	cytosol	70.57	64.32
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	63.43	61.5
Solyc01g093980.2.1	Tomato	cytosol	63.71	61.26
PGSC0003DMT400000036	Potato	cytosol	63.71	61.1
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	63.43	60.49
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	53.14	60.39
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	54.0	60.38
HORVU5Hr1G124120.1	Barley	cytosol	62.0	60.28
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	62.86	60.27
Bra005927.1-P	Field mustard	cytosol	55.71	59.82
Bra009285.1-P	Field mustard	cytosol	63.71	58.84
Bra028706.1-P	Field mustard	cytosol	62.0	57.26
KRH65199	Soybean	cytosol	62.29	57.07
EER90481	Sorghum	cytosol	61.43	56.73
Bra027106.1-P	Field mustard	cytosol	60.57	56.38
KRH48309	Soybean	cytosol	63.43	56.06
Os03t0856700-02	Rice	cytosol, mitochondrion	59.43	55.91
Bra010064.1-P	Field mustard	cytosol	59.14	54.91
GSMUA_AchrUn_...	Banana	cytosol	50.29	54.49
Bra039251.1-P	Field mustard	cytosol	58.0	54.28
Zm00001d034898_P001	Maize	plastid	61.14	52.97
Bra031467.1-P	Field mustard	cytosol	56.29	52.25
HORVU3Hr1G089980.2	Barley	cytosol	51.71	50.7
TraesCS3D01G393900.1	Wheat	cytosol	51.43	50.56
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	51.71	50.42
TraesCS3A01G399800.1	Wheat	cytosol	51.43	50.28
Os07t0169700-01	Rice	plasma membrane	52.29	49.86
TraesCS3B01G432800.1	Wheat	cytosol	51.14	49.72
EER95912	Sorghum	cytosol	50.86	46.6
Zm00001d007894_P001	Maize	cytosol	50.0	44.42
Bra014019.1-P	Field mustard	cytosol	44.86	43.98
Bra022378.1-P	Field mustard	cytosol	30.57	30.66
Bra022377.1-P	Field mustard	cytosol	27.71	27.56
Bra001729.1-P	Field mustard	nucleus	26.29	15.94

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	EnsemblPlantsGene:Bra019165	EnsemblPlants:Bra019165.1	EnsemblPlants:Bra019165.1-P	InterPro:DIOX_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M4DRM2
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF140	SUPFAM:SSF51197	UniParc:UPI00025410D4	:	:	:

Description

AT4G25420 (E=1e-175) GA5, GA20OX1, AT2301, ATGA20OX1 | GA20OX1; gibberellin 20-oxidase

Coordinates

chrA03:-:25939634..25941038

Molecular Weight (calculated)

40107.7 Da

IEP (calculated)

6.416

GRAVY (calculated)

-0.414

Length

350 amino acids

Sequence
(BLAST)

001: MLNLQATIPN QFIWPDDEKP CTEAPELDVP LIDLQNFLSA SSSPSATLEA SRLISEACSK HGFFLVVNHG ISEELISDAH ECMARFYDMP PSEKQKVQRK
101: PGESCGYASS FTGRFSTKLP WKETLSFRFC DDKNSPNTVQ DYFCDALGHE FLPLGKVYQE YCEEMSSLSL KIMELLGLSL GVSRDYFREF FEENDSIMRL
201: NYYPPCQKPN LTLGTGPHCD PTSLTILHQD HVNGLQVFVD NQWRSISPNP KAFVVNIGDT FMALSNNIYK SCLHRAVVNS QSERKSLAFF LCPKKYRVVK
301: PPRELLDSNT PRRYPDFTWS MLLEFTQKHY RADMNTLQAF SDWLTKKPIK

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.