Factsheet for Bra028706.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05017	Canola	cytosol, nucleus, peroxisome	99.47	99.47
Bra009285.1-P	Field mustard	cytosol	88.65	88.65
Bra005927.1-P	Field mustard	cytosol	73.88	85.89
AT5G07200.1	Thale cress	cytosol, nucleus, peroxisome	84.96	84.74
Bra027106.1-P	Field mustard	cytosol	70.45	71.01
Bra031467.1-P	Field mustard	cytosol	69.39	69.76
Bra039251.1-P	Field mustard	cytosol	67.02	67.91
Bra010064.1-P	Field mustard	cytosol	61.74	62.07
Bra019165.1-P	Field mustard	cytosol	57.26	62.0
Bra022565.1-P	Field mustard	cytosol	59.89	60.21
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	59.63	59.47
PGSC0003DMT400000036	Potato	cytosol	56.46	58.63
VIT_15s0048g01320.t01	Wine grape	cytosol	59.37	58.59
Bra013890.1-P	Field mustard	cytosol	58.05	58.51
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	47.49	58.44
Solyc01g093980.2.1	Tomato	cytosol	55.94	58.24
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	46.97	56.87
HORVU5Hr1G124120.1	Barley	cytosol	53.56	56.39
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	53.56	56.23
KRH65199	Soybean	cytosol	56.2	55.76
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	53.03	55.07
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	53.3	55.04
KRH48309	Soybean	cytosol	56.99	54.55
EER90481	Sorghum	cytosol	54.09	54.09
GSMUA_AchrUn_...	Banana	cytosol	45.12	52.94
Os03t0856700-02	Rice	cytosol, mitochondrion	50.4	51.34
TraesCS3D01G393900.1	Wheat	cytosol	46.97	50.0
TraesCS3A01G399800.1	Wheat	cytosol	47.23	50.0
TraesCS3B01G432800.1	Wheat	cytosol	46.7	49.17
HORVU3Hr1G089980.2	Barley	cytosol	46.17	49.02
Zm00001d034898_P001	Maize	plastid	52.24	49.01
Os07t0169700-01	Rice	plasma membrane	47.23	48.77
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	46.17	48.75
Bra014019.1-P	Field mustard	cytosol	45.12	47.9
EER95912	Sorghum	cytosol	45.38	45.03
Zm00001d007894_P001	Maize	cytosol	44.85	43.15
Bra022378.1-P	Field mustard	cytosol	28.23	30.66
Bra022377.1-P	Field mustard	cytosol	28.23	30.4
Bra001729.1-P	Field mustard	nucleus	24.8	16.29

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	EnsemblPlantsGene:Bra028706	EnsemblPlants:Bra028706.1	EnsemblPlants:Bra028706.1-P	InterPro:DIOX_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M4EIU1
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF140	SUPFAM:SSF51197	UniParc:UPI00025431EC	:	:	:

Description

AT5G07200 (E=5e-193) YAP169, GA20OX3, ATGA20OX3 | YAP169; gibberellin 20-oxidase

Coordinates

chrA02:-:2449611..2451099

Molecular Weight (calculated)

43328.3 Da

IEP (calculated)

6.141

GRAVY (calculated)

-0.483

Length

379 amino acids

Sequence
(BLAST)

001: MAMGCITALP QRFSENKTKE DPSIFDANFL NQQSNHIPQQ FVWPDHEKPS SDVQPLQVPL IDLDGFLSGD PFLVSEATRL VSEASKKHGF FLVTNHGVDD
101: TLLSRAHLSM DSFFKAPASE KQKAKRTWGE SSGYASSFVG RYSSKLPWKE TLSFKFSPEE KCHAQNIKDF VSEKMGDGYE DFGKVYQEYA EAMNILSLKI
201: MELLGMSLGI ERGHFRDFFE DSESILRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV DGLQVFVDNK WQSIPPNPQS VVVNIGDTFM ALTNGIYKSC
301: LHRAVVNSEK ARKTFAFFLC PKGDKIVKPP EELVRMMSGE REYPDFTWSM FLEFTQKHYR SDMNTLEEFS NWLKNRRSF

Best Arabidopsis Sequence Match ( AT5G07200.1 )
(BLAST)

001: MATECIATVP QIFSENKTKE DSSIFDAKLL NQHSHHIPQQ FVWPDHEKPS TDVQPLQVPL IDLAGFLSGD SCLASEATRL VSKAATKHGF FLITNHGVDE
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF

Arabidopsis Description

GA20OX3Gibberellin 20 oxidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q39112]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.