Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81038 | Canola | cytosol, nucleus, peroxisome | 86.58 | 87.04 |
| CDX98998 | Canola | cytosol, nucleus, peroxisome | 86.58 | 86.81 |
| CDX70015 | Canola | cytosol, nucleus, peroxisome | 86.58 | 86.81 |
| Bra009285.1-P | Field mustard | cytosol | 86.32 | 86.54 |
| CDY58871 | Canola | cytosol, endoplasmic reticulum, peroxisome | 85.79 | 86.24 |
| Bra005927.1-P | Field mustard | cytosol | 73.68 | 85.89 |
| CDY14054 | Canola | cytosol, nucleus, peroxisome | 85.53 | 85.75 |
| CDY05017 | Canola | cytosol, nucleus, peroxisome | 84.74 | 84.96 |
| Bra028706.1-P | Field mustard | cytosol | 84.74 | 84.96 |
| AT1G60980.1 | Thale cress | cytosol, mitochondrion, peroxisome | 73.16 | 73.94 |
| AT5G51810.1 | Thale cress | cytosol, nucleus, peroxisome | 61.58 | 61.9 |
| AT4G25420.1 | Thale cress | cytosol, nucleus, peroxisome | 61.05 | 61.54 |
| GSMUA_Achr8P19120_001 | Banana | cytosol, extracellular, peroxisome | 48.68 | 60.06 |
| PGSC0003DMT400000036 | Potato | cytosol | 57.37 | 59.73 |
| Solyc01g093980.2.1 | Tomato | cytosol | 57.11 | 59.62 |
| VIT_15s0048g01320.t01 | Wine grape | cytosol | 60.0 | 59.38 |
| GSMUA_Achr2P01010_001 | Banana | cytosol, peroxisome, plastid | 48.42 | 58.79 |
| TraesCS5D01G566200.1 | Wheat | cytosol, peroxisome, plastid | 53.68 | 56.51 |
| HORVU5Hr1G124120.1 | Barley | cytosol | 53.16 | 56.11 |
| TraesCS4A01G319100.1 | Wheat | cytosol, peroxisome, plastid | 53.42 | 55.62 |
| TraesCS5B01G560300.1 | Wheat | cytosol, peroxisome, plastid | 53.68 | 55.59 |
| KRH65199 | Soybean | cytosol | 55.26 | 54.97 |
| KRH48309 | Soybean | cytosol | 56.32 | 54.04 |
| EER90481 | Sorghum | cytosol | 53.42 | 53.56 |
| GSMUA_AchrUn_... | Banana | cytosol | 45.53 | 53.56 |
| Os03t0856700-02 | Rice | cytosol, mitochondrion | 50.53 | 51.61 |
| TraesCS3D01G393900.1 | Wheat | cytosol | 48.16 | 51.4 |
| TraesCS3A01G399800.1 | Wheat | cytosol | 48.16 | 51.12 |
| TraesCS3B01G432800.1 | Wheat | cytosol | 47.89 | 50.56 |
| HORVU3Hr1G089980.2 | Barley | cytosol | 47.11 | 50.14 |
| TraesCS3D01G394000.1 | Wheat | cytosol, peroxisome, plastid | 47.37 | 50.14 |
| Os07t0169700-01 | Rice | plasma membrane | 47.63 | 49.32 |
| Zm00001d034898_P001 | Maize | plastid | 52.37 | 49.26 |
| EER95912 | Sorghum | cytosol | 46.05 | 45.81 |
| AT1G44090.1 | Thale cress | mitochondrion | 45.0 | 44.42 |
| Zm00001d007894_P001 | Maize | cytosol | 45.79 | 44.16 |
| AT3G19010.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 28.16 | 30.66 |
| AT3G19000.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 27.11 | 29.26 |
Protein Annotations
| MapMan:11.6.1.5 | Gene3D:2.60.120.330 | EntrezGene:830611 | ProteinID:AED91121.1 | ArrayExpress:AT5G07200 | EnsemblPlantsGene:AT5G07200 |
| RefSeq:AT5G07200 | TAIR:AT5G07200 | RefSeq:AT5G07200-TAIR-G | EnsemblPlants:AT5G07200.1 | TAIR:AT5G07200.1 | Unigene:At.5050 |
| EMBL:BT004311 | EMBL:BT005615 | ProteinID:CAB87276.1 | InterPro:DIOX_N | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006629 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 |
| GO:GO:0009686 | GO:GO:0009719 | GO:GO:0009740 | GO:GO:0009791 | GO:GO:0009826 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016491 | GO:GO:0040007 | GO:GO:0045544 |
| GO:GO:0046872 | GO:GO:0055114 | InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 | RefSeq:NP_196337.1 |
| InterPro:Oxoglu/Fe-dep_dioxygenase | PFAM:PF03171 | PFAM:PF14226 | PO:PO:0009001 | PO:PO:0009010 | PO:PO:0020023 |
| PRINTS:PR00682 | PFscan:PS51471 | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF140 | UniProt:Q39112 | SUPFAM:SSF51197 |
| UniParc:UPI000000C334 | EMBL:X83381 | Symbol:YAP169 | : | : | : |
Description
GA20OX3Gibberellin 20 oxidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q39112]
Coordinates
chr5:-:2243553..2245339
Molecular Weight (calculated)
43439.6 Da
IEP (calculated)
7.369
GRAVY (calculated)
-0.458
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MATECIATVP QIFSENKTKE DSSIFDAKLL NQHSHHIPQQ FVWPDHEKPS TDVQPLQVPL IDLAGFLSGD SCLASEATRL VSKAATKHGF FLITNHGVDE
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.