Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27101 | Canola | cytosol, nucleus, peroxisome | 90.48 | 90.72 |
| Bra022565.1-P | Field mustard | cytosol | 90.21 | 90.45 |
| CDX91609 | Canola | cytosol, nucleus, peroxisome | 90.21 | 90.21 |
| Bra028277.1-P | Field mustard | cytosol, nucleus, peroxisome | 89.42 | 88.95 |
| CDY00499 | Canola | cytosol, nucleus, peroxisome | 89.42 | 88.95 |
| CDX99892 | Canola | cytosol, nucleus, peroxisome | 89.15 | 88.92 |
| CDY72226 | Canola | mitochondrion | 60.85 | 88.8 |
| CDX99893 | Canola | cytosol, nucleus, peroxisome | 89.15 | 88.68 |
| AT4G25420.1 | Thale cress | cytosol, nucleus, peroxisome | 74.07 | 74.27 |
| VIT_15s0048g01320.t01 | Wine grape | cytosol | 63.49 | 62.5 |
| AT5G07200.1 | Thale cress | cytosol, nucleus, peroxisome | 61.9 | 61.58 |
| GSMUA_Achr8P19120_001 | Banana | cytosol, extracellular, peroxisome | 50.0 | 61.36 |
| AT1G60980.1 | Thale cress | cytosol, mitochondrion, peroxisome | 60.32 | 60.64 |
| Solyc01g093980.2.1 | Tomato | cytosol | 58.2 | 60.44 |
| GSMUA_Achr2P01010_001 | Banana | cytosol, peroxisome, plastid | 50.0 | 60.38 |
| PGSC0003DMT400000036 | Potato | cytosol | 57.94 | 60.0 |
| KRH65199 | Soybean | cytosol | 60.05 | 59.42 |
| KRH48309 | Soybean | cytosol | 61.38 | 58.59 |
| TraesCS5D01G566200.1 | Wheat | cytosol, peroxisome, plastid | 55.82 | 58.45 |
| HORVU5Hr1G124120.1 | Barley | cytosol | 55.56 | 58.33 |
| TraesCS4A01G319100.1 | Wheat | cytosol, peroxisome, plastid | 55.82 | 57.81 |
| TraesCS5B01G560300.1 | Wheat | cytosol, peroxisome, plastid | 55.82 | 57.49 |
| EER90481 | Sorghum | cytosol | 55.29 | 55.15 |
| GSMUA_AchrUn_... | Banana | cytosol | 47.09 | 55.11 |
| Os03t0856700-02 | Rice | cytosol, mitochondrion | 51.85 | 52.69 |
| Zm00001d034898_P001 | Maize | plastid | 55.29 | 51.73 |
| TraesCS3A01G399800.1 | Wheat | cytosol | 48.41 | 51.12 |
| TraesCS3D01G394000.1 | Wheat | cytosol, peroxisome, plastid | 48.41 | 50.97 |
| Os07t0169700-01 | Rice | plasma membrane | 49.47 | 50.95 |
| HORVU3Hr1G089980.2 | Barley | cytosol | 47.88 | 50.7 |
| TraesCS3D01G393900.1 | Wheat | cytosol | 47.62 | 50.56 |
| TraesCS3B01G432800.1 | Wheat | cytosol | 47.88 | 50.28 |
| EER95912 | Sorghum | cytosol | 48.94 | 48.43 |
| Zm00001d007894_P001 | Maize | cytosol | 48.15 | 46.19 |
| AT1G44090.1 | Thale cress | mitochondrion | 42.33 | 41.56 |
| AT3G19010.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 28.04 | 30.37 |
| AT3G19000.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 26.45 | 28.41 |
Protein Annotations
| MapMan:11.6.1.5 | Gene3D:2.60.120.330 | EntrezGene:835256 | UniProt:A0A178UJV8 | ProteinID:AED96129.1 | ArrayExpress:AT5G51810 |
| EnsemblPlantsGene:AT5G51810 | RefSeq:AT5G51810 | TAIR:AT5G51810 | RefSeq:AT5G51810-TAIR-G | EnsemblPlants:AT5G51810.1 | TAIR:AT5G51810.1 |
| Unigene:At.28053 | ProteinID:BAB11250.1 | InterPro:DIOX_N | Symbol:GA20OX2 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006629 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009639 | GO:GO:0009653 |
| GO:GO:0009686 | GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009740 | GO:GO:0009791 | GO:GO:0009826 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016491 | GO:GO:0040007 |
| GO:GO:0045544 | GO:GO:0046872 | GO:GO:0055114 | GO:GO:0080167 | InterPro:IPNS-like | InterPro:IPR005123 |
| InterPro:IPR027443 | RefSeq:NP_199994.1 | ProteinID:OAO94108.1 | InterPro:Oxoglu/Fe-dep_dioxygenase | PFAM:PF03171 | PFAM:PF14226 |
| PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009001 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020023 | PO:PO:0020100 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00682 | PFscan:PS51471 | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF140 |
| UniProt:Q39111 | SUPFAM:SSF51197 | UniParc:UPI0000048C52 | EMBL:X83380 | SEG:seg | : |
Description
GA20OX2Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39111]
Coordinates
chr5:-:21055179..21056881
Molecular Weight (calculated)
42938.9 Da
IEP (calculated)
5.811
GRAVY (calculated)
-0.412
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.