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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • peroxisome 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX99893 Canola cytosol, nucleus, peroxisome 100.0 99.74
CDY00499 Canola cytosol, nucleus, peroxisome 99.21 98.95
CDY72226 Canola mitochondrion 67.55 98.84
CDY27101 Canola cytosol, nucleus, peroxisome 89.71 90.19
CDX91609 Canola cytosol, nucleus, peroxisome 89.45 89.68
AT5G51810.1 Thale cress cytosol, nucleus, peroxisome 88.92 89.15
CDY49714 Canola cytosol, nucleus, peroxisome 66.75 72.29
CDY55723 Canola cytosol, nucleus, peroxisome 70.98 71.54
CDX92707 Canola cytosol, nucleus, peroxisome 71.77 71.02
CDX94446 Canola cytosol, nucleus, peroxisome 70.18 70.74
GSMUA_Achr8P19120_001 Banana cytosol, extracellular, peroxisome 49.87 61.36
VIT_15s0048g01320.t01 Wine grape cytosol 61.74 60.94
CDX70015 Canola cytosol, nucleus, peroxisome 60.69 60.69
CDX98998 Canola cytosol, nucleus, peroxisome 60.69 60.69
CDY58871 Canola cytosol, endoplasmic reticulum, peroxisome 60.42 60.58
CDY05017 Canola cytosol, nucleus, peroxisome 60.42 60.42
GSMUA_Achr2P01010_001 Banana cytosol, peroxisome, plastid 49.87 60.38
CDX81038 Canola cytosol, nucleus, peroxisome 60.16 60.32
CDY14054 Canola cytosol, nucleus, peroxisome 59.89 59.89
Solyc01g093980.2.1 Tomato cytosol 57.52 59.89
CDY00263 Canola cytosol, nucleus, peroxisome 43.8 59.5
PGSC0003DMT400000036 Potato cytosol 57.26 59.45
TraesCS5D01G566200.1 Wheat cytosol, peroxisome, plastid 55.67 58.45
TraesCS4A01G319100.1 Wheat cytosol, peroxisome, plastid 55.67 57.81
TraesCS5B01G560300.1 Wheat cytosol, peroxisome, plastid 55.67 57.49
HORVU5Hr1G124120.1 Barley cytosol 54.35 57.22
KRH65199 Soybean cytosol 57.52 57.07
KRH48309 Soybean cytosol 58.31 55.81
GSMUA_AchrUn_... Banana cytosol 47.23 55.42
CDY64867 Canola cytosol 54.09 54.81
EER90481 Sorghum cytosol 54.62 54.62
CDY52529 Canola cytosol, nucleus, peroxisome 54.88 54.59
Os03t0856700-02 Rice cytosol, mitochondrion 51.98 52.96
CDY13228 Canola cytosol 10.29 52.7
CDY64866 Canola cytosol, nucleus, peroxisome 42.48 51.94
TraesCS3D01G394000.1 Wheat cytosol, peroxisome, plastid 48.81 51.53
TraesCS3A01G399800.1 Wheat cytosol 48.55 51.4
HORVU3Hr1G089980.2 Barley cytosol 48.28 51.26
TraesCS3D01G393900.1 Wheat cytosol 48.02 51.12
TraesCS3B01G432800.1 Wheat cytosol 48.55 51.11
Zm00001d034898_P001 Maize plastid 54.35 50.99
CDY12880 Canola cytosol, nucleus, vacuole 56.2 50.35
CDY60083 Canola vacuole 53.3 50.25
CDY44829 Canola cytosol 51.72 50.13
Os07t0169700-01 Rice plasma membrane 48.28 49.86
EER95912 Sorghum cytosol 48.02 47.64
CDY13227 Canola cytosol 21.11 46.78
Zm00001d007894_P001 Maize cytosol 47.23 45.43
CDY71240 Canola cytosol, peroxisome, plastid 30.34 43.07
CDY70184 Canola cytosol 31.4 36.5
CDY36334 Canola cytosol 10.29 31.97
CDY69351 Canola cytosol, peroxisome 18.73 31.42
CDX99287 Canola cytoskeleton, cytosol, peroxisome 27.97 30.46
CDX92296 Canola cytosol, nucleus, peroxisome 27.7 30.09
CDX82317 Canola cytosol 27.97 30.03
CDX82318 Canola cytosol 27.97 30.03
CDY22994 Canola cytosol 27.97 30.03
CDY22995 Canola cytosol 27.97 30.03
CDX92294 Canola cytosol 25.86 27.84
CDX99288 Canola cytosol 25.86 27.84
Protein Annotations
MapMan:11.6.1.5Gene3D:2.60.120.330GO:A0A078EFN7EnsemblPlants:CDX99892ProteinID:CDX99892ProteinID:CDX99892.1
InterPro:DIOX_NGO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0016491
GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00108686001InterPro:IPNS-likeInterPro:IPR005123InterPro:IPR027443InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171PFAM:PF14226PRINTS:PR00682PFscan:PS51471PANTHER:PTHR10209PANTHER:PTHR10209:SF140
SUPFAM:SSF51197UniParc:UPI0004EE067DSEG:seg:::
Description
BnaC09g28130D
Coordinates
chrLK031915:+:42541..43934
Molecular Weight (calculated)
43250.4 Da
IEP (calculated)
5.432
GRAVY (calculated)
-0.374
Length
379 amino acids
Sequence
(BLAST)
001: MAIICTTPTS PAEKEQEPKQ DLENDQTPPL IFNPSLLNVQ SQIPNQFIWP DKEKPSIDIP ELNVPFIDLS SQDTTLEASR LIAEACTKHG FFLVVNHGVS
101: ESLISDAHRY MESFFDMPLA GKQRAQRKPG ESWGYASSFT GRFSTKLPWK ETLSFPFSNE ISGSRTVQDY FSGTLGQEFE QFGRVYQNYC EAMSSLSLEI
201: MELLGLSLGI KKDHFREFFE ENDSIMRLNH YPPCQTPDLT LGTGPHCDPS SLTILHQDQV NGLQVFVENQ WQSILPNPKA FVVNIGDTFM ALSNGIFKSC
301: LHRAVVNRES ARTSMAFFLC PKRDKVVKPP SEILEKMTPR RYPDFTWPMF LEFTQKHYRA DVNTLDSFTN WIITNKFTV
Best Arabidopsis Sequence Match ( AT5G51810.1 )
(BLAST)
001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI
Arabidopsis Description
GA20OX2Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39111]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.