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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • peroxisome 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019165.1-P Field mustard cytosol 99.71 99.71
CDX92707 Canola cytosol, nucleus, peroxisome 95.14 86.95
CDY55723 Canola cytosol, nucleus, peroxisome 88.57 82.45
CDX94446 Canola cytosol, nucleus, peroxisome 88.29 82.18
AT4G25420.1 Thale cress cytosol, nucleus, peroxisome 86.0 79.84
CDY72226 Canola mitochondrion 55.43 74.9
CDY27101 Canola cytosol, nucleus, peroxisome 75.71 70.29
CDX91609 Canola cytosol, nucleus, peroxisome 75.43 69.84
CDX99892 Canola cytosol, nucleus, peroxisome 72.29 66.75
CDY00499 Canola cytosol, nucleus, peroxisome 72.29 66.58
CDX99893 Canola cytosol, nucleus, peroxisome 72.29 66.58
VIT_15s0048g01320.t01 Wine grape cytosol 70.57 64.32
TraesCS5D01G566200.1 Wheat cytosol, peroxisome, plastid 63.71 61.77
Solyc01g093980.2.1 Tomato cytosol 64.0 61.54
PGSC0003DMT400000036 Potato cytosol 64.0 61.37
CDY00263 Canola cytosol, nucleus, peroxisome 48.86 61.29
CDY13228 Canola cytosol 12.86 60.81
TraesCS5B01G560300.1 Wheat cytosol, peroxisome, plastid 63.71 60.76
GSMUA_Achr8P19120_001 Banana cytosol, extracellular, peroxisome 53.43 60.71
GSMUA_Achr2P01010_001 Banana cytosol, peroxisome, plastid 54.29 60.7
CDY58871 Canola cytosol, endoplasmic reticulum, peroxisome 65.43 60.58
HORVU5Hr1G124120.1 Barley cytosol 62.29 60.56
TraesCS4A01G319100.1 Wheat cytosol, peroxisome, plastid 63.14 60.55
CDX81038 Canola cytosol, nucleus, peroxisome 65.14 60.32
CDX70015 Canola cytosol, nucleus, peroxisome 64.0 59.1
CDX98998 Canola cytosol, nucleus, peroxisome 63.71 58.84
CDY14054 Canola cytosol, nucleus, peroxisome 62.86 58.05
CDY05017 Canola cytosol, nucleus, peroxisome 62.57 57.78
KRH65199 Soybean cytosol 62.57 57.33
EER90481 Sorghum cytosol 61.71 56.99
KRH48309 Soybean cytosol 63.71 56.31
Os03t0856700-02 Rice cytosol, mitochondrion 59.71 56.18
CDY52529 Canola cytosol, nucleus, peroxisome 60.0 55.12
GSMUA_AchrUn_... Banana cytosol 50.57 54.8
CDY64867 Canola cytosol 58.29 54.55
Zm00001d034898_P001 Maize plastid 61.43 53.22
HORVU3Hr1G089980.2 Barley cytosol 52.0 50.98
TraesCS3D01G393900.1 Wheat cytosol 51.71 50.84
TraesCS3D01G394000.1 Wheat cytosol, peroxisome, plastid 52.0 50.7
TraesCS3A01G399800.1 Wheat cytosol 51.71 50.56
CDY12880 Canola cytosol, nucleus, vacuole 60.86 50.35
Os07t0169700-01 Rice plasma membrane 52.57 50.14
CDY64866 Canola cytosol, nucleus, peroxisome 44.29 50.0
TraesCS3B01G432800.1 Wheat cytosol 51.43 50.0
CDY60083 Canola vacuole 56.86 49.5
CDY44829 Canola cytosol 55.14 49.36
EER95912 Sorghum cytosol 51.14 46.86
Zm00001d007894_P001 Maize cytosol 50.29 44.67
CDY13227 Canola cytosol 21.14 43.27
CDY71240 Canola cytosol, peroxisome, plastid 32.29 42.32
CDY70184 Canola cytosol 34.29 36.81
CDY69351 Canola cytosol, peroxisome 20.57 31.86
CDX99287 Canola cytoskeleton, cytosol, peroxisome 31.14 31.32
CDX92296 Canola cytosol, nucleus, peroxisome 30.86 30.95
CDX82318 Canola cytosol 30.0 29.75
CDX82317 Canola cytosol 30.0 29.75
CDY22995 Canola cytosol 30.0 29.75
CDY22994 Canola cytosol 30.0 29.75
CDY36334 Canola cytosol 10.29 29.51
CDX99288 Canola cytosol 27.71 27.56
CDX92294 Canola cytosol 27.43 27.27
Protein Annotations
MapMan:11.6.1.5Gene3D:2.60.120.330GO:A0A078IJW7UniProt:A0A078IJW7EnsemblPlants:CDY49714ProteinID:CDY49714
ProteinID:CDY49714.1InterPro:DIOX_NGO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0008150
GO:GO:0008152GO:GO:0016491GO:GO:0046872GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00093619001InterPro:IPNS-like
InterPro:IPR005123InterPro:IPR027443InterPro:Oxoglu/Fe-dep_dioxygenasePFAM:PF03171PFAM:PF14226PRINTS:PR00682
PFscan:PS51471PANTHER:PTHR10209PANTHER:PTHR10209:SF140SUPFAM:SSF51197UniParc:UPI0004EDE4E1:
Description
BnaA03g47400DBnaA03g47400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJW7]
Coordinates
chrLK032854:-:71570..72970
Molecular Weight (calculated)
40059.6 Da
IEP (calculated)
6.240
GRAVY (calculated)
-0.420
Length
350 amino acids
Sequence
(BLAST)
001: MLNLQATIPN QFIWPDDEKP CTEAPELDVP LIDLQNFLSA SSSPSATLEA SRLISEACSK HGFFLVVNHG ISEELISDAH ECMARFYDMP PSEKQKVQRK
101: PGESCGYASS FTGRFSTKLP WKETLSFRFC DDKNSPNTVQ DYFCDALGHE FLPLGKVYQE YCEEMSSLSL KIMELLGLSL GVSRDYFREF FEENDSIMRL
201: NYYPPCQKPN LTLGTGPHCD PTSLTILHQD HVNGLQVFVD NQWRSISPNP KAFVVNIGDT FMALSNNIYK SCLHRAVVNS QSERKSLAFF LCPKKDRVVK
301: PPRELLDSNT PRRYPDFTWS MLLEFTQKHY RADMNTLQAF SDWLTKKPIK
Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)
001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI
Arabidopsis Description
GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.