Factsheet for Zm00001d034898_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90481	Sorghum	cytosol	82.92	88.39
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	66.34	73.42
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	65.59	73.41
HORVU5Hr1G124120.1	Barley	cytosol	65.35	73.33
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	66.58	73.3
Os03t0856700-02	Rice	cytosol, mitochondrion	64.36	69.89
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	50.74	66.56
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	50.25	64.86
PGSC0003DMT400086432	Potato	cytosol	24.75	64.1
CDY72226	Canola	mitochondrion	39.6	61.78
CDY49714	Canola	cytosol, nucleus, peroxisome	53.22	61.43
Bra019165.1-P	Field mustard	cytosol	52.97	61.14
PGSC0003DMT400036523	Potato	cytosol	47.03	61.09
VIT_16s0022g02310.t01	Wine grape	cytosol	57.43	60.73
GSMUA_AchrUn_...	Banana	cytosol	48.51	60.68
PGSC0003DMT400062314	Potato	cytosol	56.68	60.58
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	23.51	60.13
VIT_15s0048g01320.t01	Wine grape	cytosol	56.93	59.9
KRG91415	Soybean	cytosol	56.68	59.79
Solyc03g006880.2.1	Tomato	cytosol	55.94	59.79
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	23.76	59.63
KRH38652	Soybean	cytosol	56.19	59.42
PGSC0003DMT400071866	Potato	cytosol	54.21	58.4
KRH35405	Soybean	cytosol	52.72	58.36
KRH09174	Soybean	cytosol	43.56	57.89
Solyc06g035530.2.1	Tomato	cytosol	53.22	57.8
Solyc01g093980.2.1	Tomato	cytosol	51.98	57.69
PGSC0003DMT400090397	Potato	cytosol	53.22	57.64
PGSC0003DMT400000036	Potato	cytosol	51.73	57.26
Solyc11g072310.1.1	Tomato	cytosol	53.71	57.26
CDX92707	Canola	cytosol, nucleus, peroxisome	54.21	57.18
CDY55723	Canola	cytosol, nucleus, peroxisome	52.97	56.91
CDX94446	Canola	cytosol, nucleus, peroxisome	52.97	56.91
PGSC0003DMT400042644	Potato	cytosol	47.28	56.85
AT4G25420.1	Thale cress	cytosol, nucleus, peroxisome	52.97	56.76
Bra013890.1-P	Field mustard	cytosol	52.72	56.65
Solyc09g009110.2.1	Tomato	cytosol	52.72	56.35
CDY27101	Canola	cytosol, nucleus, peroxisome	51.98	55.7
Bra022565.1-P	Field mustard	cytosol	51.73	55.44
AT5G51810.1	Thale cress	cytosol, nucleus, peroxisome	51.73	55.29
CDX91609	Canola	cytosol, nucleus, peroxisome	51.73	55.29
CDY00263	Canola	cytosol, nucleus, peroxisome	37.87	54.84
Solyc06g050110.1.1	Tomato	cytosol	49.26	54.82
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	51.24	54.76
PGSC0003DMT400090198	Potato	mitochondrion	12.13	54.44
CDX99892	Canola	cytosol, nucleus, peroxisome	50.99	54.35
CDX81038	Canola	cytosol, nucleus, peroxisome	50.74	54.23
CDX99893	Canola	cytosol, nucleus, peroxisome	50.99	54.21
CDY00499	Canola	cytosol, nucleus, peroxisome	50.74	53.95
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	50.74	53.95
CDX98998	Canola	cytosol, nucleus, peroxisome	50.49	53.83
CDX70015	Canola	cytosol, nucleus, peroxisome	50.49	53.83
Bra005927.1-P	Field mustard	cytosol	43.32	53.68
KRH65199	Soybean	cytosol	50.74	53.66
Bra009285.1-P	Field mustard	cytosol	50.25	53.56
CDY13228	Canola	cytosol	9.65	52.7
AT5G07200.1	Thale cress	cytosol, nucleus, peroxisome	49.26	52.37
Zm00001d007894_P001	Maize	cytosol	50.99	52.28
Bra028706.1-P	Field mustard	cytosol	49.01	52.24
CDY14054	Canola	cytosol, nucleus, peroxisome	49.01	52.24
KRH48309	Soybean	cytosol	50.99	52.02
CDY05017	Canola	cytosol, nucleus, peroxisome	48.76	51.98
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	16.58	51.94
Zm00001d042611_P001	Maize	cytosol	49.51	51.81
AT1G60980.1	Thale cress	cytosol, mitochondrion, peroxisome	47.77	51.33
PGSC0003DMT400088638	Potato	cytosol	31.93	50.99
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	23.76	50.53
Bra027106.1-P	Field mustard	cytosol	46.53	50.0
PGSC0003DMT400091526	Potato	cytosol	29.46	49.79
Bra039251.1-P	Field mustard	cytosol	45.3	48.93
CDY52529	Canola	cytosol, nucleus, peroxisome	46.04	48.82
CDY64867	Canola	cytosol	45.05	48.66
Bra010064.1-P	Field mustard	cytosol	45.05	48.28
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	14.36	46.03
Bra031467.1-P	Field mustard	cytosol	42.82	45.89
CDY60083	Canola	vacuole	45.54	45.77
CDY44829	Canola	cytosol	43.81	45.27
CDY64866	Canola	cytosol, nucleus, peroxisome	34.16	44.52
CDY12880	Canola	cytosol, nucleus, vacuole	46.53	44.44
Zm00001d012212_P001	Maize	plastid	50.0	43.63
Solyc10g045770.1.1	Tomato	cytosol	11.63	43.12
Solyc10g046820.1.1	Tomato	cytosol, nucleus, peroxisome	20.54	42.13
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	11.63	41.59
PGSC0003DMT400089703	Potato	nucleus	15.1	40.67
CDY13227	Canola	cytosol	15.35	36.26
Zm00001d033327_P001	Maize	cytosol	24.75	32.47
Zm00001d013725_P002	Maize	cytosol	21.78	23.72

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	UniProt:A0A1D6LC85	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	ProteinID:ONM11702.1	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140	SUPFAM:SSF51197
UniParc:UPI0008454154	EnsemblPlantsGene:Zm00001d034898	EnsemblPlants:Zm00001d034898_P001	EnsemblPlants:Zm00001d034898_T001	SEG:seg	:

Description

gibberellin 20-oxidase1 gibberellin 20-oxidase1

Coordinates

chr1:-:305074531..305075830

Molecular Weight (calculated)

45003.3 Da

IEP (calculated)

7.153

GRAVY (calculated)

-0.321

Length

404 amino acids

Sequence
(BLAST)

001: MAAHWQAGRA GTSKQAVAVA AASSSASSLL LLTMVLAAHD PPPLVFDAAR LSGLSDIPQQ FIWPADESPT PDSAEELAVP LIDLSGDAAE VVRQVRRACD
101: LHGFFQVVGH GIDAALTAEA HRCMDAFFTL PLPDKQRAQR RQGDSCGYAS SFTGRFASKL PWKETLSFRY TDDDDGDKSK DVVASYFVDK LGEGYRHHGE
201: VYGRYCSEMS RLSLELMEVL GESLGVGRRH FRRFFQGNDS IMRLNYYPPC QRPYDTLGTG PHCDPTSLTI LHQDDVGGLQ VFDAATLAWR SIRPRPGAFV
301: VNIGDTFMAL SNGRYRSCLH RAVVNSRVAR RSLAFFLCPE MDKVVRPPKE LVDDANPRAY PDFTWRTLLD FTMRHYRSDM RTLEAFSNWL STSSNGGQHL
401: LEKK

Best Arabidopsis Sequence Match ( AT5G51810.1 )
(BLAST)

001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI

Arabidopsis Description

GA20OX2Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39111]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.