Factsheet for Zm00001d012212_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042611_P001	Maize	cytosol	78.62	94.3
OQU87995	Sorghum	plastid	88.98	93.21
Os01t0883800-02	Rice	cytosol	69.11	82.26
HORVU3Hr1G090980.3	Barley	plastid	69.55	77.78
TraesCS3D01G401400.1	Wheat	plastid	72.14	76.61
TraesCS3B01G439900.1	Wheat	plastid	68.9	75.77
TraesCS3A01G406200.1	Wheat	plastid	72.14	75.57
GSMUA_Achr6P25910_001	Banana	cytosol	42.55	62.54
GSMUA_Achr8P32560_001	Banana	cytosol, nucleus, peroxisome	42.98	61.04
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	42.12	59.82
GSMUA_Achr4P16380_001	Banana	cytosol	49.03	59.58
GSMUA_Achr11P...	Banana	cytosol	42.76	52.52
VIT_18s0001g01390.t01	Wine grape	cytosol	42.33	51.85
KRH64020	Soybean	cytosol	42.98	50.77
VIT_04s0044g01650.t01	Wine grape	cytosol	41.25	50.66
KRH53918	Soybean	cytosol, nucleus, peroxisome	41.25	50.4
Zm00001d034898_P001	Maize	plastid	43.63	50.0
KRH16465	Soybean	cytosol, nucleus, peroxisome	40.39	49.73
KRH18058	Soybean	cytosol	40.17	49.6
KRH53327	Soybean	cytosol	38.88	49.18
Bra014019.1-P	Field mustard	cytosol	36.93	47.9
KRH64596	Soybean	cytosol	38.88	47.62
CDY71240	Canola	cytosol, peroxisome, plastid	26.78	46.44
Solyc11g013360.1.1	Tomato	cytosol	34.34	46.09
VIT_04s0044g01520.t01	Wine grape	cytosol	37.15	45.87
Zm00001d007894_P001	Maize	cytosol	38.88	45.69
AT1G44090.1	Thale cress	mitochondrion	37.15	44.68
CDY70184	Canola	cytosol	28.29	40.18
CDY36334	Canola	cytosol	9.29	35.25
Zm00001d033327_P001	Maize	cytosol	22.68	34.09
Zm00001d013725_P002	Maize	cytosol	19.65	24.53

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	ProteinID:AQK99102.1	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:K7VMU4	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF129	SUPFAM:SSF51197
UniParc:UPI000221C0B7	EnsemblPlantsGene:Zm00001d012212	EnsemblPlants:Zm00001d012212_P001	EnsemblPlants:Zm00001d012212_T001	SEG:seg	:

Description

gibberellin 20-oxidase5 gibberellin 20-oxidase5

Coordinates

chr8:-:170115789..170118570

Molecular Weight (calculated)

50675.4 Da

IEP (calculated)

8.314

GRAVY (calculated)

-0.273

Length

463 amino acids

Sequence
(BLAST)

001: MRPRLPPNVP SLPSSLSLLA NSLSSPVTNT PTRPDSFPAY LQLAHLMVSQ ERQEPAVPSS SSSSAKRAAT SMDASPAPPL LLRAPTPSPS IDLPAGKDKA
101: DAAASKAGAA VFDLRREPKI PAPFLWPQEE ARPSSAAELE VPMVDVGVLR NGDRAGLRRA AAQVAAACAT HGFFQVCGHG VDAALGRAAL DGASDFFRLP
201: LAEKQRARRV PGTVSGYTSA HADRFAAKLP WKETLSFGYH DGAASPVVVD YFVGTLGQDF EPMGWVYQRY CEEMKELSLT IMELLELSLG VELRGYYREF
301: FEDSRSIMRC NYYPPCPEPE RTLGTGPHCD PTALTILLQD DVGGLEVLVD GEWRPVRPVP GAMVINIGDT FMALSNGRYK SCLHRAVVNQ RRARRSLAFF
401: LCPREDRVVR PPASAAPRRY PDFTWADLMR FTQRHYRADT RTLDAFTRWL SHGPAQAAAP PCT

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.