Factsheet for GSMUA_Achr11P18740_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P32560_001	Banana	cytosol, nucleus, peroxisome	70.86	70.86
GSMUA_Achr6P25910_001	Banana	cytosol	61.96	64.13
GSMUA_Achr4P16380_001	Banana	cytosol	72.7	62.2
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	52.15	55.19
VIT_18s0001g01390.t01	Wine grape	cytosol	63.19	54.5
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	50.61	52.72
GSMUA_Achr11P...	Banana	cytosol	59.51	51.46
KRH53918	Soybean	cytosol, nucleus, peroxisome	58.59	50.4
Os01t0883800-02	Rice	cytosol	60.12	50.39
Zm00001d042611_P001	Maize	cytosol	59.2	50.0
KRH64020	Soybean	cytosol	60.12	50.0
GSMUA_AchrUn_...	Banana	cytosol	48.77	49.23
VIT_04s0044g01650.t01	Wine grape	cytosol	56.75	49.07
KRH53327	Soybean	cytosol	54.91	48.91
KRH18058	Soybean	cytosol	56.13	48.8
KRH16465	Soybean	cytosol, nucleus, peroxisome	55.52	48.14
KRH64596	Soybean	cytosol	55.52	47.88
TraesCS3B01G439900.1	Wheat	plastid	60.74	47.03
HORVU3Hr1G090980.3	Barley	plastid	59.2	46.62
Os05t0421900-00	Rice	cytosol	57.98	46.32
TraesCS1A01G263600.1	Wheat	cytosol	55.52	45.36
TraesCS3D01G401400.1	Wheat	plastid	60.43	45.18
CDY71240	Canola	cytosol, peroxisome, plastid	36.81	44.94
TraesCS1B01G274200.1	Wheat	cytosol	56.44	44.66
TraesCS3A01G406200.1	Wheat	plastid	60.43	44.57
VIT_04s0044g01520.t01	Wine grape	cytosol	50.92	44.27
TraesCS1D01G263700.1	Wheat	cytosol	55.83	44.17
OQU87995	Sorghum	plastid	59.82	44.12
Solyc11g013360.1.1	Tomato	cytosol	46.32	43.77
Bra014019.1-P	Field mustard	cytosol	47.85	43.7
AT1G44090.1	Thale cress	mitochondrion	50.0	42.34
Zm00001d012212_P001	Maize	plastid	59.82	42.12
CDY70184	Canola	cytosol	37.73	37.73
HORVU1Hr1G063780.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	46.01	36.06
CDY36334	Canola	cytosol	11.96	31.97
OQU78027	Sorghum	cytosol	46.32	30.32
GSMUA_Achr7P08240_001	Banana	cytosol	24.85	25.8
GSMUA_Achr7P08230_001	Banana	cytosol	24.23	24.46

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr11G18740_001	EnsemblPlants:GSMUA_Achr11P18740_001
EnsemblPlants:GSMUA_Achr11T18740_001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M0RTF4	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF129	SUPFAM:SSF51197	UniParc:UPI00029579B5

Description

Gibberellin 20 oxidase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G18740_001]

Coordinates

chr11:+:20062818..20064276

Molecular Weight (calculated)

36707.7 Da

IEP (calculated)

7.261

GRAVY (calculated)

-0.271

Length

326 amino acids

Sequence
(BLAST)

001: MDLSPTSVLL CPPLDISHGN AGGVIFDSSS LRQQTTIPKA FIWPSTDRPA ATEELDAPVV DLGGFFHGDE ESTMRAAKLV ANACERHGFF QLRARRKPGG
101: VWGYSGAHAD RFSSKLPWKE TLSFGYREAA GSERIVIDYF VSVLGEEFER MGLAYQMYCE AMTGLSLAIM ELLAISLGAD RMTYREFFDD NRSIMRCNYY
201: PPCQEPELTL GTGPHCDPTA LTILQQDHVG GLEVFSGRAW RYVRPVHNAL VVNIGDTFMA LSNGRYKSCL HRAVVNRHRE RRSLAFFVCP REDKFMDFTQ
301: RHYRADMRTL RSFAKWLESS SSATAT

Best Arabidopsis Sequence Match ( AT5G51810.1 )
(BLAST)

001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI

Arabidopsis Description

GA20OX2Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39111]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.