Factsheet for VIT_04s0044g01650.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g01390.t01	Wine grape	cytosol	62.6	62.43
KRH53918	Soybean	cytosol, nucleus, peroxisome	59.68	59.37
KRH64020	Soybean	cytosol	61.54	59.18
VIT_04s0044g01520.t01	Wine grape	cytosol	58.09	58.4
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	49.07	56.75
GSMUA_Achr8P32560_001	Banana	cytosol, nucleus, peroxisome	46.95	54.29
GSMUA_Achr4P16380_001	Banana	cytosol	54.64	54.07
VIT_16s0022g02310.t01	Wine grape	cytosol	51.99	51.31
VIT_15s0048g01320.t01	Wine grape	cytosol	50.66	49.74
Zm00001d042611_P001	Maize	cytosol	49.87	48.7
Os01t0883800-02	Rice	cytosol	49.6	48.07
Bra014019.1-P	Field mustard	cytosol	45.36	47.9
TraesCS1A01G263600.1	Wheat	cytosol	49.34	46.62
CDY71240	Canola	cytosol, peroxisome, plastid	32.63	46.07
HORVU3Hr1G090980.3	Barley	plastid	49.87	45.41
AT1G44090.1	Thale cress	mitochondrion	46.15	45.19
TraesCS1D01G263700.1	Wheat	cytosol	49.07	44.9
TraesCS1B01G274200.1	Wheat	cytosol	48.81	44.66
TraesCS3B01G439900.1	Wheat	plastid	49.87	44.66
TraesCS3D01G401400.1	Wheat	plastid	50.13	43.35
OQU87995	Sorghum	plastid	50.66	43.21
Os05t0421900-00	Rice	cytosol	46.15	42.65
TraesCS3A01G406200.1	Wheat	plastid	49.87	42.53
Zm00001d012212_P001	Maize	plastid	50.66	41.25
CDY70184	Canola	cytosol	34.48	39.88
CDY36334	Canola	cytosol	11.94	36.89
HORVU1Hr1G063780.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	39.79	36.06
VIT_03s0063g01220.t01	Wine grape	cytosol	9.02	35.79
OQU78027	Sorghum	cytosol	41.11	31.12
VIT_03s0063g01330.t01	Wine grape	cytosol	25.73	31.09
VIT_03s0063g01280.t01	Wine grape	cytosol	20.16	30.77
VIT_03s0063g01150.t01	Wine grape	cytosol	27.85	30.7
VIT_03s0063g01210.t01	Wine grape	cytosol	27.85	30.7
VIT_03s0063g01250.t01	Wine grape	cytosol	15.38	30.69
VIT_03s0063g01340.t01	Wine grape	cytosol	27.85	30.26
VIT_03s0063g01160.t01	Wine grape	cytosol	21.75	30.26
VIT_03s0063g01290.t01	Wine grape	cytosol	27.32	30.12
VIT_03s0063g01260.t01	Wine grape	cytosol	25.99	28.66
VIT_02s0234g00010.t01	Wine grape	cytosol	26.53	28.01
VIT_03s0063g01180.t01	Wine grape	cytosol	26.26	25.19
VIT_03s0063g01310.t01	Wine grape	cytosol	27.85	17.8

Protein Annotations

EntrezGene:100255041	wikigene:100255041	MapMan:11.6.1.5	Gene3D:2.60.120.330	ProteinID:CBI37510	ProteinID:CBI37510.3
UniProt:D7U4B3	InterPro:DIOX_N	EMBL:FN596506	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	EMBL:KC898186	EntrezGene:LOC100255041	wikigene:LOC100255041	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF368
SUPFAM:SSF51197	UniParc:UPI00015CC7C7	ArrayExpress:VIT_04s0044g01650	EnsemblPlantsGene:VIT_04s0044g01650	EnsemblPlants:VIT_04s0044g01650.t01	unigene:Vvi.20715
RefSeq:XP_002266536	RefSeq:XP_002266536.1	RefSeq:XP_019074802.1	:	:	:

Description

GA20ox2 [Source:UniProtKB/TrEMBL;Acc:D7U4B3]

Coordinates

chr4:-:23382366..23384136

Molecular Weight (calculated)

42814.3 Da

IEP (calculated)

6.714

GRAVY (calculated)

-0.410

Length

377 amino acids

Sequence
(BLAST)

001: MDSSASTILM PPPLELKDER KKGSVVFDSS KMQKQEKLPT EFIWPDADLV RAQQELNEPL IDLDGFFKGD EAATAHAAEL IRMACLNHGF FQVTNHGVDL
101: DLIRAAQEDM GAFFKLPLSR KLSVKKKPGE LSGYSGAHAD RYTSKLPWKE TLSFVYCYDS GSKPMVADYF KTALGEDFEQ IGWIYQKYCD ALKELSLGIM
201: QLLAISLDVD SSYYRKLFED GYSIMRCNSY PPCKEAGLVM GTGPHCDPVA LTILHQDQVK GLEVFVDNKW QSVKPRPGAL VVNIGDTFMA LSNGKYKSCI
301: HRAVVNMDKE RRSLTFFMSP KDDKVVSPPQ ELIVREGPRK YPDFKWSELL EFTQKHYRPN NDTLQSFVEW RLSSQTK

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.