Factsheet for GSMUA_Achr4P16380_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P32560_001	Banana	cytosol, nucleus, peroxisome	70.34	82.21
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	62.2	72.7
GSMUA_Achr6P25910_001	Banana	cytosol	55.38	66.98
VIT_18s0001g01390.t01	Wine grape	cytosol	58.79	59.26
GSMUA_Achr11P...	Banana	cytosol	58.01	58.62
Zm00001d042611_P001	Maize	cytosol	59.06	58.29
Os01t0883800-02	Rice	cytosol	58.27	57.07
KRH18058	Soybean	cytosol	55.91	56.8
KRH64020	Soybean	cytosol	58.27	56.63
KRH16465	Soybean	cytosol, nucleus, peroxisome	55.64	56.38
KRH53918	Soybean	cytosol, nucleus, peroxisome	55.64	55.94
KRH53327	Soybean	cytosol	53.54	55.74
HORVU3Hr1G090980.3	Barley	plastid	59.84	55.07
KRH64596	Soybean	cytosol	54.59	55.03
VIT_04s0044g01650.t01	Wine grape	cytosol	54.07	54.64
TraesCS3B01G439900.1	Wheat	plastid	60.37	54.63
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	44.62	54.31
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	43.83	54.22
TraesCS3D01G401400.1	Wheat	plastid	60.37	52.75
TraesCS3A01G406200.1	Wheat	plastid	60.89	52.49
Os05t0421900-00	Rice	cytosol	55.64	51.96
OQU87995	Sorghum	plastid	59.32	51.13
Bra014019.1-P	Field mustard	cytosol	47.77	50.98
TraesCS1A01G263600.1	Wheat	cytosol	53.28	50.88
CDY71240	Canola	cytosol, peroxisome, plastid	35.43	50.56
Solyc11g013360.1.1	Tomato	cytosol	45.67	50.43
TraesCS1B01G274200.1	Wheat	cytosol	54.07	50.0
VIT_04s0044g01520.t01	Wine grape	cytosol	48.82	49.6
TraesCS1D01G263700.1	Wheat	cytosol	53.54	49.51
Zm00001d012212_P001	Maize	plastid	59.58	49.03
GSMUA_AchrUn_...	Banana	cytosol	41.21	48.61
AT1G44090.1	Thale cress	mitochondrion	48.29	47.79
CDY70184	Canola	cytosol	36.75	42.94
CDY36334	Canola	cytosol	13.65	42.62
HORVU1Hr1G063780.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	42.78	39.18
OQU78027	Sorghum	cytosol	46.72	35.74
GSMUA_Achr7P08240_001	Banana	cytosol	24.41	29.62
GSMUA_Achr7P08230_001	Banana	cytosol	24.41	28.79

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G16380_001
EnsemblPlants:GSMUA_Achr4P16380_001	EnsemblPlants:GSMUA_Achr4T16380_001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M0SPF2
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF129	SUPFAM:SSF51197	UniParc:UPI000294F9AE	:	:	:

Description

Gibberellin 20 oxidase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G16380_001]

Coordinates

chr4:-:14661621..14663603

Molecular Weight (calculated)

42756.7 Da

IEP (calculated)

7.481

GRAVY (calculated)

-0.312

Length

381 amino acids

Sequence
(BLAST)

001: MDCNPTSILL RTPLDLNKER DAGAGGVVFN SSVLGNQASI PKAFIWPQCH RPATIDDLDA PVVDLGGFLR GDEASTARAV EYVRAACSTH GFFQVANHGV
101: DASLAREAMD CVDGFFKLPL CHKLRARRKP GSVWGYTGAH ADRFSSELPW KETLSFGYHE AGGGDRVVVD YFASILGPDF DRTGLVLQRY CEAMKKLSLV
201: IMELLAISLG VERSHYRDFF EDSCSIMRCN YYPPCQEPEL TLGTGPHCDP TSLTILQQDQ VEGLEVFSAN KWRSVRPIRD ALVINIGDTF MALSNGRYKS
301: CLHRAVVNRH RERKSLAFFV CPREDRTIRP PPGDLGGSRL YPDFTWAEFM QFTQRHYRSD TRTLHSFTNW LSSSNSLRQS T

Best Arabidopsis Sequence Match ( AT5G51810.1 )
(BLAST)

001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI

Arabidopsis Description

GA20OX2Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39111]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.