Factsheet for GSMUA_Achr8P32560_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	70.86	70.86
GSMUA_Achr4P16380_001	Banana	cytosol	82.21	70.34
GSMUA_Achr6P25910_001	Banana	cytosol	62.58	64.76
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	54.29	56.55
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	53.37	56.49
GSMUA_Achr11P...	Banana	cytosol	63.8	55.17
VIT_18s0001g01390.t01	Wine grape	cytosol	60.43	52.12
Zm00001d042611_P001	Maize	cytosol	60.12	50.78
GSMUA_AchrUn_...	Banana	cytosol	49.39	49.85
KRH64020	Soybean	cytosol	59.51	49.49
Os01t0883800-02	Rice	cytosol	58.59	49.1
KRH18058	Soybean	cytosol	56.44	49.07
KRH16465	Soybean	cytosol, nucleus, peroxisome	56.13	48.67
KRH53918	Soybean	cytosol, nucleus, peroxisome	56.13	48.28
KRH53327	Soybean	cytosol	53.99	48.09
KRH64596	Soybean	cytosol	55.21	47.62
CDY71240	Canola	cytosol, peroxisome, plastid	38.96	47.57
VIT_04s0044g01650.t01	Wine grape	cytosol	54.29	46.95
TraesCS3B01G439900.1	Wheat	plastid	60.12	46.56
HORVU3Hr1G090980.3	Barley	plastid	58.9	46.38
OQU87995	Sorghum	plastid	60.74	44.8
TraesCS3D01G401400.1	Wheat	plastid	59.82	44.72
Os05t0421900-00	Rice	cytosol	55.83	44.61
TraesCS3A01G406200.1	Wheat	plastid	60.43	44.57
VIT_04s0044g01520.t01	Wine grape	cytosol	50.92	44.27
Bra014019.1-P	Field mustard	cytosol	48.47	44.26
TraesCS1A01G263600.1	Wheat	cytosol	53.37	43.61
Zm00001d012212_P001	Maize	plastid	61.04	42.98
TraesCS1B01G274200.1	Wheat	cytosol	54.29	42.96
Solyc11g013360.1.1	Tomato	cytosol	45.4	42.9
TraesCS1D01G263700.1	Wheat	cytosol	53.99	42.72
AT1G44090.1	Thale cress	mitochondrion	50.31	42.6
CDY70184	Canola	cytosol	39.88	39.88
HORVU1Hr1G063780.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	44.48	34.86
CDY36334	Canola	cytosol	12.88	34.43
OQU78027	Sorghum	cytosol	46.63	30.52
GSMUA_Achr7P08240_001	Banana	cytosol	24.54	25.48
GSMUA_Achr7P08230_001	Banana	cytosol	23.93	24.15

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr8G32560_001	EnsemblPlants:GSMUA_Achr8P32560_001
EnsemblPlants:GSMUA_Achr8T32560_001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M0TVK8	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF129	SUPFAM:SSF51197	UniParc:UPI000296633B
SEG:seg	:	:	:	:	:

Description

Gibberellin 20 oxidase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G32560_001]

Coordinates

chr8:-:33911692..33913414

Molecular Weight (calculated)

36946.0 Da

IEP (calculated)

7.914

GRAVY (calculated)

-0.348

Length

326 amino acids

Sequence
(BLAST)

001: MDCNPTSVVL RPSLALDKER EAGSGGVVFS SALLPNQATI PKAFIWPQCD RPTAIEELDS PVVDLDGFLR GDEASTARAV DCVRAACSTH GFFQLRARRK
101: PGNMWGYVGA HADRFSSELP WKETLSFGYH EAGDDRVVID YFTSTLGNDF QRMGLVFQRY CEAMKKLSLV IMELLAMSLG VDRTHYRDFF EDSRSIMRCN
201: YYPPCPEPEL TLGTGPHCDP TSLTILRQDQ VDGLEVFDGN RWRSVRPIRD ALVINIGDTF MALSNGRYKS CLHRAVVNRR RQRKSLAFFL CPREDRVRHY
301: RADMKTLHSF TDWLLSSSSP SPLRST

Best Arabidopsis Sequence Match ( AT1G44090.1 )
(BLAST)

001: MCIYASRQTV CPYLTPFKVK RPKSREMNSS DVNFSLLQSQ PNVPAEFFWP EKDVAPSEGD LDLPIIDLSG FLNGNEAETQ LAAKAVKKAC MAHGTFLVVN
101: HGFKSGLAEK ALEISSLFFG LSKDEKLRAY RIPGNISGYT AGHSQRFSSN LPWNETLTLA FKKGPPHVVE DFLTSRLGNH RQEIGQVFQE FCDAMNGLVM
201: DLMELLGISM GLKDRTYYRR FFEDGSGIFR CNYYPPCKQP EKALGVGPHN DPTAITVLLQ DDVVGLEVFA AGSWQTVRPR PGALVVNVGD TFMALSNGNY
301: RSCYHRAVVN KEKVRRSLVF FSCPREDKII VPPPELVEGE EASRKYPDFT WAQLQKFTQS GYRVDNTTLH NFSSWLVSNS DKKST

Arabidopsis Description

GA20OX5Gibberellin 20 oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.