Factsheet for TraesCS1B01G274200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G263700.1	Wheat	cytosol	95.87	95.87
TraesCS1A01G263600.1	Wheat	cytosol	92.72	95.74
HORVU1Hr1G063780.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	73.79	73.08
Os05t0421900-00	Rice	cytosol	67.96	68.63
TraesCS3B01G439900.1	Wheat	plastid	62.86	61.52
GSMUA_Achr6P25910_001	Banana	cytosol	43.69	57.14
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	44.66	56.44
GSMUA_Achr8P32560_001	Banana	cytosol, nucleus, peroxisome	42.96	54.29
GSMUA_Achr4P16380_001	Banana	cytosol	50.0	54.07
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	45.39	50.95
KRH53918	Soybean	cytosol, nucleus, peroxisome	46.36	50.4
KRH64020	Soybean	cytosol	47.57	50.0
VIT_18s0001g01390.t01	Wine grape	cytosol	45.63	49.74
GSMUA_Achr11P...	Banana	cytosol	45.39	49.6
VIT_04s0044g01650.t01	Wine grape	cytosol	44.66	48.81
TraesCS3B01G432800.1	Wheat	cytosol	42.48	48.61
Bra014019.1-P	Field mustard	cytosol	40.53	46.78
KRH53327	Soybean	cytosol	41.5	46.72
KRH18058	Soybean	cytosol	42.23	46.4
KRH64596	Soybean	cytosol	42.48	46.3
KRH16465	Soybean	cytosol, nucleus, peroxisome	41.99	46.01
OQU78027	Sorghum	cytosol	55.34	45.78
AT1G44090.1	Thale cress	mitochondrion	41.99	44.94
Solyc11g013360.1.1	Tomato	cytosol	37.38	44.64
CDY71240	Canola	cytosol, peroxisome, plastid	28.88	44.57
VIT_04s0044g01520.t01	Wine grape	cytosol	39.08	42.93
CDY70184	Canola	cytosol	30.58	38.65
CDY36334	Canola	cytosol	9.47	31.97
TraesCS4B01G081200.1	Wheat	cytosol	25.73	30.46

Protein Annotations

EnsemblPlants:TraesCS1B01G274200.1	EnsemblPlantsGene:TraesCS1B01G274200	Gene3D:2.60.120.330	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:DIOX_N	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PANTHER:PTHR10209	PANTHER:PTHR10209:SF115	PFAM:PF03171	PFAM:PF14226
PFscan:PS51471	SEG:seg	SUPFAM:SSF51197	MapMan:11.6.1.5	:	:

Description

No Description!

Coordinates

chr1B:+:481294473..481299420

Molecular Weight (calculated)

44962.1 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.251

Length

412 amino acids

Sequence
(BLAST)

001: MVDLSNFLEA NAAMPIPAME VARSPHLPYV PGDANATDSK NATDVLDLWR QQKQIPAPFV WPNADARPSS MLELDVPVVD IGAALHSAAG MGRAAAQVAE
101: ACASHGFFQV TGHGVDPALA RAALDGAADF FRLPLATKQG ARRSPGTVEG YASAHADRFA AKLPWKETLS FSHNHDDVGA RGDSHVVVDY FTSALGGDFK
201: HLGEVYQEYC EAMEDASLAI MEVLGVSLGL GRGYYRDFFA DGSSIMRCNY YPRCPEPDRT LGTGPHCDPS ALTILLQDGE VDGLQVLVDG AWRFVRPKTG
301: ELVVNIGDTF MALSNGRYKS CLHRAVVHRE KERRSLAYFL SPREDRVVRP PPSPAPAPRL YPDFTWAELM RFTQRHYRAD SRTLDAFARW LDPPSFSAAP
401: LPHGPAQAQG TV

Best Arabidopsis Sequence Match ( AT1G44090.1 )
(BLAST)

001: MCIYASRQTV CPYLTPFKVK RPKSREMNSS DVNFSLLQSQ PNVPAEFFWP EKDVAPSEGD LDLPIIDLSG FLNGNEAETQ LAAKAVKKAC MAHGTFLVVN
101: HGFKSGLAEK ALEISSLFFG LSKDEKLRAY RIPGNISGYT AGHSQRFSSN LPWNETLTLA FKKGPPHVVE DFLTSRLGNH RQEIGQVFQE FCDAMNGLVM
201: DLMELLGISM GLKDRTYYRR FFEDGSGIFR CNYYPPCKQP EKALGVGPHN DPTAITVLLQ DDVVGLEVFA AGSWQTVRPR PGALVVNVGD TFMALSNGNY
301: RSCYHRAVVN KEKVRRSLVF FSCPREDKII VPPPELVEGE EASRKYPDFT WAQLQKFTQS GYRVDNTTLH NFSSWLVSNS DKKST

Arabidopsis Description

GA20OX5Gibberellin 20 oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.