Factsheet for VIT_18s0001g01390.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16465	Soybean	cytosol, nucleus, peroxisome	62.96	63.3
KRH18058	Soybean	cytosol	62.7	63.2
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	54.5	63.19
VIT_04s0044g01650.t01	Wine grape	cytosol	62.43	62.6
KRH53327	Soybean	cytosol	59.79	61.75
KRH64596	Soybean	cytosol	61.11	61.11
GSMUA_Achr8P32560_001	Banana	cytosol, nucleus, peroxisome	52.12	60.43
GSMUA_Achr4P16380_001	Banana	cytosol	59.26	58.79
Solyc11g013360.1.1	Tomato	cytosol	51.06	55.94
VIT_16s0022g02310.t01	Wine grape	cytosol	53.97	53.4
VIT_04s0044g01520.t01	Wine grape	cytosol	52.38	52.8
VIT_15s0048g01320.t01	Wine grape	cytosol	52.65	51.82
Zm00001d042611_P001	Maize	cytosol	52.38	51.3
Os01t0883800-02	Rice	cytosol	52.12	50.64
Bra014019.1-P	Field mustard	cytosol	47.62	50.42
CDY71240	Canola	cytosol, peroxisome, plastid	34.13	48.31
HORVU3Hr1G090980.3	Barley	plastid	52.91	48.31
TraesCS3B01G439900.1	Wheat	plastid	53.44	47.98
AT1G44090.1	Thale cress	mitochondrion	47.62	46.75
TraesCS3D01G401400.1	Wheat	plastid	52.91	45.87
TraesCS1A01G263600.1	Wheat	cytosol	48.41	45.86
TraesCS1B01G274200.1	Wheat	cytosol	49.74	45.63
TraesCS3A01G406200.1	Wheat	plastid	53.17	45.48
TraesCS1D01G263700.1	Wheat	cytosol	49.21	45.15
Os05t0421900-00	Rice	cytosol	48.68	45.1
OQU87995	Sorghum	plastid	52.65	45.02
Zm00001d012212_P001	Maize	plastid	51.85	42.33
CDY70184	Canola	cytosol	35.71	41.41
CDY36334	Canola	cytosol	11.64	36.07
HORVU1Hr1G063780.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	39.42	35.82
VIT_03s0063g01220.t01	Wine grape	cytosol	8.73	34.74
VIT_03s0063g01250.t01	Wine grape	cytosol	16.14	32.28
OQU78027	Sorghum	cytosol	42.06	31.93
VIT_03s0063g01160.t01	Wine grape	cytosol	22.22	31.0
VIT_03s0063g01280.t01	Wine grape	cytosol	20.11	30.77
VIT_03s0063g01210.t01	Wine grape	cytosol	26.98	29.82
VIT_03s0063g01150.t01	Wine grape	cytosol	26.98	29.82
VIT_03s0063g01330.t01	Wine grape	cytosol	24.6	29.81
VIT_03s0063g01290.t01	Wine grape	cytosol	26.72	29.53
VIT_03s0063g01340.t01	Wine grape	cytosol	26.98	29.39
VIT_02s0234g00010.t01	Wine grape	cytosol	27.51	29.13
VIT_03s0063g01260.t01	Wine grape	cytosol	25.66	28.36
VIT_03s0063g01180.t01	Wine grape	cytosol	26.19	25.19
VIT_03s0063g01310.t01	Wine grape	cytosol	26.72	17.12

Protein Annotations

EntrezGene:100267658	wikigene:100267658	MapMan:11.6.1.5	Gene3D:2.60.120.330	ProteinID:CCB45433	ProteinID:CCB45433.1
InterPro:DIOX_N	UniProt:F6H0G1	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	EntrezGene:LOC100267658	wikigene:LOC100267658	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF129	SUPFAM:SSF51197
UniParc:UPI00015C7D98	ArrayExpress:VIT_18s0001g01390	EnsemblPlantsGene:VIT_18s0001g01390	EnsemblPlants:VIT_18s0001g01390.t01	RefSeq:XP_002284681	RefSeq:XP_002284681.1

Description

No Description!

Coordinates

chr18:-:1982983..1985445

Molecular Weight (calculated)

43292.6 Da

IEP (calculated)

7.416

GRAVY (calculated)

-0.419

Length

378 amino acids

Sequence
(BLAST)

001: MDLGASTLLC PPLELTDKKE HGVSPSDSSF FKKQPNIPME FIWAKGEVGH AHEELREPVV DLEGFFSGDE VATQHAAMLV RSACLNHGFF QVINHRVDPH
101: LITVAHDHME AFFKLPWSKK LRAQRKPGSL WGYSGAHADR FSLKLPWKET LSFGFHENGS ESVVEDFFKS TLGEEFEQTG LVYQKYCQAM KDLSLVLMEL
201: LAISLGVDRL HYRKFFEDGS SIMRCNYYPP CQEPGLAFGT GPHCDPTSLT ILHQDQVGGL EVYVNNKWRT IRPRCDALVI NLGDTFKALS NGRYKSCLHR
301: AVVNRYKERR SLVFFVCPRE NKVVTPPQDL VCREGTRKYP DFKWSDLLEF TQKYYRADDA TLQNFTKWLL SSNPPNHH

Best Arabidopsis Sequence Match ( AT5G51810.1 )
(BLAST)

001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI

Arabidopsis Description

GA20OX2Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39111]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.