Factsheet for VIT_02s0234g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090419	Potato	cytosol	38.94	72.02
Solyc12g013780.1.1	Tomato	cytosol	67.79	64.88
VIT_03s0063g01220.t01	Wine grape	cytosol	10.08	37.89
VIT_03s0063g01250.t01	Wine grape	cytosol	16.53	31.22
VIT_03s0063g01340.t01	Wine grape	cytosol	29.69	30.55
VIT_03s0063g01330.t01	Wine grape	cytosol	25.77	29.49
VIT_03s0063g01160.t01	Wine grape	cytosol	21.85	28.78
VIT_16s0022g02310.t01	Wine grape	cytosol	30.53	28.53
VIT_03s0063g01210.t01	Wine grape	cytosol	27.17	28.36
VIT_03s0063g01150.t01	Wine grape	cytosol	26.89	28.07
VIT_03s0063g01280.t01	Wine grape	cytosol	19.33	27.94
VIT_04s0044g01520.t01	Wine grape	cytosol	29.13	27.73
VIT_18s0001g01390.t01	Wine grape	cytosol	29.13	27.51
VIT_03s0063g01260.t01	Wine grape	cytosol	26.33	27.49
VIT_03s0063g01290.t01	Wine grape	cytosol	26.05	27.19
VIT_15s0048g01320.t01	Wine grape	cytosol	28.85	26.82
VIT_04s0044g01650.t01	Wine grape	cytosol	28.01	26.53
VIT_03s0063g01180.t01	Wine grape	cytosol	26.61	24.17
VIT_03s0063g01310.t01	Wine grape	cytosol	28.01	16.95

Protein Annotations

EntrezGene:100854724	wikigene:100854724	MapMan:11.6.1.5	Gene3D:2.60.120.330	ProteinID:CBI25764	ProteinID:CBI25764.3
UniProt:D7T5I1	InterPro:DIOX_N	EMBL:FN595528	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	EntrezGene:LOC100854724	wikigene:LOC100854724	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF393	SUPFAM:SSF51197	UniParc:UPI00015CE2DE
ArrayExpress:VIT_02s0234g00010	EnsemblPlantsGene:VIT_02s0234g00010	EnsemblPlants:VIT_02s0234g00010.t01	RefSeq:XP_003631372	RefSeq:XP_003631372.1	:

Description

No Description!

Coordinates

chr2:-:12465..13764

Molecular Weight (calculated)

40186.4 Da

IEP (calculated)

6.183

GRAVY (calculated)

-0.230

Length

357 amino acids

Sequence
(BLAST)

001: MALEIEEHPV ESLSSGPKLC VKNFVWSEHE WPLINHDDFA DGDDIPTISL EGNLSGKPCQ DYDKVCQVMV TACEKWGFFK LVDHGVAIET VENVKVQLNE
101: LFDLPMDQKL KGARSTSLPL GYCASNPEYG QNLPWAEILQ LLQSPQQVVA FARKVFGDQH QPFSNAMVKY MQALDKLGMK IFEMLAHGMG LPDDFFTKNF
201: EEKEATMIRV NRYPPCPLPE KCLGVGSHSD PHTLTILLQD DVGGLQVLKS DNQWIGIRPV PNSFVINIGD TLEAWTNGRL RSVVHRAVVN KEKHRLSVAY
301: FLSPATSAII DCPPQLIESS TNLRKYVSFT WGEFRKELLT QKRVVGKTAL NRYLISP

Best Arabidopsis Sequence Match ( AT1G44090.1 )
(BLAST)

001: MCIYASRQTV CPYLTPFKVK RPKSREMNSS DVNFSLLQSQ PNVPAEFFWP EKDVAPSEGD LDLPIIDLSG FLNGNEAETQ LAAKAVKKAC MAHGTFLVVN
101: HGFKSGLAEK ALEISSLFFG LSKDEKLRAY RIPGNISGYT AGHSQRFSSN LPWNETLTLA FKKGPPHVVE DFLTSRLGNH RQEIGQVFQE FCDAMNGLVM
201: DLMELLGISM GLKDRTYYRR FFEDGSGIFR CNYYPPCKQP EKALGVGPHN DPTAITVLLQ DDVVGLEVFA AGSWQTVRPR PGALVVNVGD TFMALSNGNY
301: RSCYHRAVVN KEKVRRSLVF FSCPREDKII VPPPELVEGE EASRKYPDFT WAQLQKFTQS GYRVDNTTLH NFSSWLVSNS DKKST

Arabidopsis Description

GA20OX5Gibberellin 20 oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.