Factsheet for PGSC0003DMT400090419

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g013780.1.1	Tomato	cytosol	94.82	49.06
PGSC0003DMT400086432	Potato	cytosol	31.61	39.1
VIT_02s0234g00010.t01	Wine grape	cytosol	72.02	38.94
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	27.46	32.92
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	16.06	27.43
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	17.62	26.36
PGSC0003DMT400090198	Potato	mitochondrion	10.88	23.33
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	15.03	23.02
PGSC0003DMT400036523	Potato	cytosol	34.72	21.54
PGSC0003DMT400042644	Potato	cytosol	36.27	20.83
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	16.06	19.62
PGSC0003DMT400062314	Potato	cytosol	38.34	19.58
PGSC0003DMT400090397	Potato	cytosol	37.82	19.57
PGSC0003DMT400071866	Potato	cytosol	37.31	19.2
PGSC0003DMT400000036	Potato	cytosol	35.75	18.9
PGSC0003DMT400066714	Potato	cytosol	30.57	16.81
PGSC0003DMT400091526	Potato	cytosol	20.73	16.74
PGSC0003DMT400066716	Potato	cytosol	30.05	16.38
PGSC0003DMT400088638	Potato	cytosol	13.47	10.28
PGSC0003DMT400089703	Potato	nucleus	5.7	7.33
PGSC0003DMT400066712	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400090419	EnsemblPlantsGene:PGSC0003DMG400039990	Gene3D:2.60.120.330	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
InterPro:Oxoglu/Fe-dep_dioxygenase	PANTHER:PTHR10209	PANTHER:PTHR10209:SF393	PFAM:PF03171	PFscan:PS51471	PGSC:PGSC0003DMG400039990
SEG:seg	SUPFAM:SSF51197	UniParc:UPI000294F94A	UniProt:M1DKC5	MapMan:50.1.13	:

Description

Gibberellin 20 oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400039990]

Coordinates

chr12:+:638022..639060

Molecular Weight (calculated)

22283.4 Da

IEP (calculated)

10.142

GRAVY (calculated)

-0.230

Length

193 amino acids

Sequence
(BLAST)

001: MIDYMKEMDK LGMVIFKMLA HGLGLEDDFF FRKKFEEKEA TYFRVSRYPP CPLPEKNVGI GIHSDPQTLT ILHQDQVGGL QVLKDDKQWI GVRPLPNSFV
101: INIGDTLEAW TNGRLKSVIH RAVVNKEKQR LSIAYFMSPT SNAIIECPPQ LIHPIYNPRK YVPFTWAQLR HLLLTTKRVR GKAVALNKFF ISN

Best Arabidopsis Sequence Match ( AT5G07200.1 )
(BLAST)

001: MATECIATVP QIFSENKTKE DSSIFDAKLL NQHSHHIPQQ FVWPDHEKPS TDVQPLQVPL IDLAGFLSGD SCLASEATRL VSKAATKHGF FLITNHGVDE
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF

Arabidopsis Description

GA20OX3Gibberellin 20 oxidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q39112]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.