Factsheet for PGSC0003DMT400088638

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090198	Potato	mitochondrion	26.09	73.33
PGSC0003DMT400089703	Potato	nucleus	37.55	63.33
PGSC0003DMT400091526	Potato	cytosol	51.38	54.39
PGSC0003DMT400090397	Potato	cytosol	79.05	53.62
PGSC0003DMT400042644	Potato	cytosol	66.01	49.7
PGSC0003DMT400036523	Potato	cytosol	60.47	49.2
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	31.23	49.07
PGSC0003DMT400062314	Potato	cytosol	72.73	48.68
PGSC0003DMT400086432	Potato	cytosol	29.25	47.44
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	23.32	46.83
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	23.72	46.51
PGSC0003DMT400071866	Potato	cytosol	64.82	43.73
VIT_16s0022g02310.t01	Wine grape	cytosol	62.85	41.62
KRH38652	Soybean	cytosol	60.87	40.31
PGSC0003DMT400000036	Potato	cytosol	56.92	39.45
KRG91415	Soybean	cytosol	59.68	39.43
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	55.34	38.78
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	55.34	38.15
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	54.94	38.08
HORVU5Hr1G124120.1	Barley	cytosol	53.36	37.5
KRH35405	Soybean	cytosol	53.75	37.26
KRH09174	Soybean	cytosol	41.9	34.87
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	21.74	34.81
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	26.09	34.74
Os03t0856700-02	Rice	cytosol, mitochondrion	50.99	34.68
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	41.5	34.09
EER90481	Sorghum	cytosol	50.2	33.51
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	41.11	33.23
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	45.45	32.03
TraesCS3D01G393900.1	Wheat	cytosol	45.06	32.02
HORVU3Hr1G089980.2	Barley	cytosol	45.06	31.93
Zm00001d034898_P001	Maize	plastid	50.99	31.93
TraesCS3A01G399800.1	Wheat	cytosol	45.06	31.84
TraesCS3B01G432800.1	Wheat	cytosol	44.66	31.39
Os07t0169700-01	Rice	plasma membrane	44.66	30.79
GSMUA_AchrUn_...	Banana	cytosol	38.74	30.34
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	13.44	30.09
EER95912	Sorghum	cytosol	43.08	28.53
Zm00001d007894_P001	Maize	cytosol	43.87	28.17
PGSC0003DMT400066712	Potato	cytosol	13.83	22.15
PGSC0003DMT400066714	Potato	cytosol	23.32	16.81
PGSC0003DMT400066716	Potato	cytosol	22.53	16.1
PGSC0003DMT400090419	Potato	cytosol	10.28	13.47

Protein Annotations

EnsemblPlants:PGSC0003DMT400088638	EnsemblPlantsGene:PGSC0003DMG400038209	Gene3D:2.60.120.330	InterPro:DIOX_N	InterPro:IPNS-like	InterPro:IPR027443
PANTHER:PTHR10209	PANTHER:PTHR10209:SF140	PFAM:PF14226	PGSC:PGSC0003DMG400038209	SUPFAM:SSF51197	UniParc:UPI0002957A25
UniProt:M1DGE6	MapMan:35.1	:	:	:	:

Description

Gibberellin biosynthesis protein GA20ox1 [Source:PGSC_GENE;Acc:PGSC0003DMG400038209]

Coordinates

chr10:+:16227195..16228759

Molecular Weight (calculated)

29072.7 Da

IEP (calculated)

7.864

GRAVY (calculated)

-0.279

Length

253 amino acids

Sequence
(BLAST)

001: MKNESSIPTQ YIWPDDEKPC VVAHKLHVPL IDLRGFFSGD PAAAEQASRL VGEACKIHGF FLVVNHEVDA NLVSYANHSV DMFFGIPLYE KKKYQRKIGE
101: YCGYASSFTG RCSLKLPWKE TLSLRYSAKE GSSHIVEEYF QSILGECFKN LGLNMIYLVF VLFQALSSGR YKSCLHRAVI NNKTPRKSLA FFLFPDNDKE
201: VSPPTELVYY KNPRLYPDFT WPALLEFTQK HHRADTNTFQ AFSMWIQDNN VEA

Best Arabidopsis Sequence Match ( AT4G25420.2 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MVTHLDF

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.