Factsheet for PGSC0003DMT400097234

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090198	Potato	mitochondrion	38.1	53.33
PGSC0003DMT400086432	Potato	cytosol	49.21	39.74
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	49.21	38.51
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	37.3	36.43
PGSC0003DMT400091526	Potato	cytosol	46.03	24.27
PGSC0003DMT400089703	Potato	nucleus	28.57	24.0
PGSC0003DMT400088638	Potato	cytosol	46.83	23.32
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	20.63	23.01
PGSC0003DMT400042644	Potato	cytosol	56.35	21.13
PGSC0003DMT400090397	Potato	cytosol	60.32	20.38
PGSC0003DMT400062314	Potato	cytosol	57.14	19.05
PGSC0003DMT400071866	Potato	cytosol	54.76	18.4
PGSC0003DMT400036523	Potato	cytosol	45.24	18.33
KRH35405	Soybean	cytosol	52.38	18.08
VIT_16s0022g02310.t01	Wine grape	cytosol	53.97	17.8
KRG91415	Soybean	cytosol	53.97	17.75
KRH38652	Soybean	cytosol	53.17	17.54
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	48.41	16.9
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	49.21	16.89
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	25.4	16.84
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	48.41	16.71
HORVU5Hr1G124120.1	Barley	cytosol	47.62	16.67
PGSC0003DMT400000036	Potato	cytosol	47.62	16.44
EER90481	Sorghum	cytosol	46.03	15.3
Os03t0856700-02	Rice	cytosol, mitochondrion	44.44	15.05
PGSC0003DMT400090419	Potato	cytosol	23.02	15.03
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	36.51	14.94
HORVU3Hr1G089980.2	Barley	cytosol	41.27	14.57
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	41.27	14.48
Os07t0169700-01	Rice	plasma membrane	42.06	14.44
Zm00001d034898_P001	Maize	plastid	46.03	14.36
TraesCS3D01G393900.1	Wheat	cytosol	40.48	14.33
TraesCS3A01G399800.1	Wheat	cytosol	40.48	14.25
TraesCS3B01G432800.1	Wheat	cytosol	40.48	14.17
KRH09174	Soybean	cytosol	33.33	13.82
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	34.13	13.74
GSMUA_AchrUn_...	Banana	cytosol	34.92	13.62
EER95912	Sorghum	cytosol	40.48	13.35
Zm00001d007894_P001	Maize	cytosol	41.27	13.2
PGSC0003DMT400066716	Potato	cytosol	24.6	8.76
PGSC0003DMT400066714	Potato	cytosol	23.81	8.55
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	9.52	7.59
PGSC0003DMT400066712	Potato	cytosol	2.38	1.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400097234	EnsemblPlantsGene:PGSC0003DMG400046805	Gene3D:2.60.120.330	InterPro:IPNS-like	InterPro:IPR027443	PANTHER:PTHR10209
PANTHER:PTHR10209:SF140	PGSC:PGSC0003DMG400046805	SUPFAM:SSF51197	UniParc:UPI000295BD7F	UniProt:M1E067	MapMan:35.1

Description

Ntc12 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400046805]

Coordinates

chr10:-:16953233..16955256

Molecular Weight (calculated)

14200.1 Da

IEP (calculated)

10.770

GRAVY (calculated)

-0.435

Length

126 amino acids

Sequence
(BLAST)

001: MISLSRFTPN VGFTVREALR GLLLELPKSG SSTVDTGNSS RSRSQTVMRT TTLLNGRYKS ILHRVVVNNK TRRKSFALFL CPDKDKVVSP PTELVDYNNP
101: RLYPDFKCTA LLEFTQKHPK ADANNL

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.