Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400090198 | Potato | mitochondrion | 40.37 | 72.22 |
| PGSC0003DMT400086432 | Potato | cytosol | 61.49 | 63.46 |
| PGSC0003DMT400097234 | Potato | cytosol, mitochondrion, plastid | 38.51 | 49.21 |
| PGSC0003DMT400088528 | Potato | cytosol, peroxisome, plastid | 32.3 | 40.31 |
| PGSC0003DMT400042644 | Potato | cytosol | 78.88 | 37.8 |
| PGSC0003DMT400090397 | Potato | cytosol | 80.12 | 34.58 |
| PGSC0003DMT400091205 | Potato | cytosol, nucleus, peroxisome | 33.54 | 34.18 |
| PGSC0003DMT400036523 | Potato | cytosol | 62.73 | 32.48 |
| PGSC0003DMT400062314 | Potato | cytosol | 75.16 | 32.01 |
| PGSC0003DMT400071866 | Potato | cytosol | 73.29 | 31.47 |
| PGSC0003DMT400088638 | Potato | cytosol | 49.07 | 31.23 |
| KRH35405 | Soybean | cytosol | 68.32 | 30.14 |
| PGSC0003DMT400089703 | Potato | nucleus | 27.95 | 30.0 |
| KRH38652 | Soybean | cytosol | 68.94 | 29.06 |
| VIT_16s0022g02310.t01 | Wine grape | cytosol | 68.94 | 29.06 |
| KRG91415 | Soybean | cytosol | 68.94 | 28.98 |
| HORVU5Hr1G124120.1 | Barley | cytosol | 63.98 | 28.61 |
| GSMUA_Achr8P19120_001 | Banana | cytosol, extracellular, peroxisome | 54.66 | 28.57 |
| TraesCS5D01G566200.1 | Wheat | cytosol, peroxisome, plastid | 63.98 | 28.53 |
| TraesCS5B01G560300.1 | Wheat | cytosol, peroxisome, plastid | 64.6 | 28.34 |
| PGSC0003DMT400086504 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 19.88 | 28.32 |
| TraesCS4A01G319100.1 | Wheat | cytosol, peroxisome, plastid | 63.98 | 28.22 |
| PGSC0003DMT400091526 | Potato | cytosol | 41.61 | 28.03 |
| KRH09174 | Soybean | cytosol | 52.17 | 27.63 |
| GSMUA_Achr2P01010_001 | Banana | cytosol, peroxisome, plastid | 53.42 | 27.48 |
| PGSC0003DMT400090419 | Potato | cytosol | 32.92 | 27.46 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.42 | 26.63 |
| PGSC0003DMT400000036 | Potato | cytosol | 60.25 | 26.58 |
| Os03t0856700-02 | Rice | cytosol, mitochondrion | 59.63 | 25.81 |
| EER90481 | Sorghum | cytosol | 60.25 | 25.59 |
| Zm00001d034898_P001 | Maize | plastid | 59.63 | 23.76 |
| HORVU3Hr1G089980.2 | Barley | cytosol | 49.07 | 22.13 |
| TraesCS3A01G399800.1 | Wheat | cytosol | 49.07 | 22.07 |
| TraesCS3B01G432800.1 | Wheat | cytosol | 49.07 | 21.94 |
| TraesCS3D01G393900.1 | Wheat | cytosol | 48.45 | 21.91 |
| Os07t0169700-01 | Rice | plasma membrane | 49.69 | 21.8 |
| TraesCS3D01G394000.1 | Wheat | cytosol, peroxisome, plastid | 48.45 | 21.73 |
| EER95912 | Sorghum | cytosol | 47.2 | 19.9 |
| Zm00001d007894_P001 | Maize | cytosol | 47.83 | 19.54 |
| PGSC0003DMT400066716 | Potato | cytosol | 31.06 | 14.12 |
| PGSC0003DMT400066714 | Potato | cytosol | 27.95 | 12.82 |
| PGSC0003DMT400066712 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400092587 | EnsemblPlantsGene:PGSC0003DMG400042158 | Gene3D:2.60.120.330 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 |
| InterPro:Oxoglu/Fe-dep_dioxygenase | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF140 | PFAM:PF03171 | PGSC:PGSC0003DMG400042158 | SUPFAM:SSF51197 |
| UniParc:UPI000296C78F | UniProt:M1DQ43 | MapMan:35.1 | : | : | : |
Description
Ntc12 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400042158]
Coordinates
chr10:+:17087813..17088585
Molecular Weight (calculated)
18886.6 Da
IEP (calculated)
8.429
GRAVY (calculated)
-0.415
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTLSLRIME LLGMSLGVQK SNFKDFFEYN EFIMRLKYYP LCQKPELTLG TWPHYDPTSL TVTYQDYVSE LQALSNGRYK SCLHRAVINN KTPRKSLAFF
101: ICPAKEKVVS PPTELVDYKN PRLYPDFTWP SLFEFTQKHY RADTNTLQAF SMWIQDNNVD A
101: ICPAKEKVVS PPTELVDYKN PRLYPDFTWP SLFEFTQKHY RADTNTLQAF SMWIQDNNVD A
001: MECIIKLPQR FNKNKSKKNP LRIFDSTVLN HQPDHIPQEF VWPDHEKPSK NVPILQVPVI DLAGFLSNDP LLVSEAERLV SEAAKKHGFF LVTNHGVDER
101: LLSTAHKLMD TFFKSPNYEK LKAQRKVGET TGYASSFVGR FKENLPWKET LSFSFSPTEK SENYSQTVKN YISKTMGDGY KDFGSVYQEY AETMSNLSLK
201: IMELLGMSLG IKREHFREFF EDNESIFRLN YYPKCKQPDL VLGTGPHCDP TSLTILQQDQ VSGLQVFVDN QWQSIPPIPQ ALVVNIGDTL MALTNGIYKS
301: CLHRAVVNGE TTRKTLAFFL CPKVDKVVKP PSELEGERAY PDFTWSMFLE FTMKHYRADM NTLEEFTNWL KNKGSF
101: LLSTAHKLMD TFFKSPNYEK LKAQRKVGET TGYASSFVGR FKENLPWKET LSFSFSPTEK SENYSQTVKN YISKTMGDGY KDFGSVYQEY AETMSNLSLK
201: IMELLGMSLG IKREHFREFF EDNESIFRLN YYPKCKQPDL VLGTGPHCDP TSLTILQQDQ VSGLQVFVDN QWQSIPPIPQ ALVVNIGDTL MALTNGIYKS
301: CLHRAVVNGE TTRKTLAFFL CPKVDKVVKP PSELEGERAY PDFTWSMFLE FTMKHYRADM NTLEEFTNWL KNKGSF
Arabidopsis Description
GA20OX4Gibberellin 20 oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C955]
SUBAcon: [mitochondrion,peroxisome,cytosol]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.