Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- peroxisome 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400090198 | Potato | mitochondrion | 37.98 | 54.44 |
| PGSC0003DMT400086432 | Potato | cytosol | 60.47 | 50.0 |
| PGSC0003DMT400086504 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 40.31 | 46.02 |
| PGSC0003DMT400097234 | Potato | cytosol, mitochondrion, plastid | 36.43 | 37.3 |
| PGSC0003DMT400091526 | Potato | cytosol | 68.99 | 37.24 |
| PGSC0003DMT400092587 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 40.31 | 32.3 |
| PGSC0003DMT400042644 | Potato | cytosol | 68.22 | 26.19 |
| PGSC0003DMT400036523 | Potato | cytosol | 61.24 | 25.4 |
| PGSC0003DMT400090397 | Potato | cytosol | 68.99 | 23.86 |
| PGSC0003DMT400088638 | Potato | cytosol | 46.51 | 23.72 |
| PGSC0003DMT400062314 | Potato | cytosol | 64.34 | 21.96 |
| PGSC0003DMT400071866 | Potato | cytosol | 63.57 | 21.87 |
| KRH35405 | Soybean | cytosol | 59.69 | 21.1 |
| Solyc10g045690.1.1 | Tomato | cytosol, nucleus, peroxisome | 31.01 | 21.05 |
| KRH38652 | Soybean | cytosol | 62.02 | 20.94 |
| KRG91415 | Soybean | cytosol | 60.47 | 20.37 |
| VIT_16s0022g02310.t01 | Wine grape | cytosol | 58.91 | 19.9 |
| HORVU5Hr1G124120.1 | Barley | cytosol | 52.71 | 18.89 |
| PGSC0003DMT400089703 | Potato | nucleus | 21.71 | 18.67 |
| TraesCS5D01G566200.1 | Wheat | cytosol, peroxisome, plastid | 51.94 | 18.56 |
| TraesCS5B01G560300.1 | Wheat | cytosol, peroxisome, plastid | 52.71 | 18.53 |
| PGSC0003DMT400000036 | Potato | cytosol | 51.94 | 18.36 |
| TraesCS4A01G319100.1 | Wheat | cytosol, peroxisome, plastid | 51.94 | 18.36 |
| EER90481 | Sorghum | cytosol | 52.71 | 17.94 |
| PGSC0003DMT400090419 | Potato | cytosol | 26.36 | 17.62 |
| KRH09174 | Soybean | cytosol | 39.53 | 16.78 |
| Os03t0856700-02 | Rice | cytosol, mitochondrion | 48.06 | 16.67 |
| Zm00001d034898_P001 | Maize | plastid | 51.94 | 16.58 |
| GSMUA_Achr8P19120_001 | Banana | cytosol, extracellular, peroxisome | 37.98 | 15.91 |
| GSMUA_Achr2P01010_001 | Banana | cytosol, peroxisome, plastid | 37.98 | 15.65 |
| Os07t0169700-01 | Rice | plasma membrane | 44.19 | 15.53 |
| TraesCS3D01G393900.1 | Wheat | cytosol | 41.86 | 15.17 |
| HORVU3Hr1G089980.2 | Barley | cytosol | 41.86 | 15.13 |
| TraesCS3A01G399800.1 | Wheat | cytosol | 41.86 | 15.08 |
| TraesCS3D01G394000.1 | Wheat | cytosol, peroxisome, plastid | 41.86 | 15.04 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.21 | 14.86 |
| TraesCS3B01G432800.1 | Wheat | cytosol | 41.09 | 14.72 |
| EER95912 | Sorghum | cytosol | 40.31 | 13.61 |
| Zm00001d007894_P001 | Maize | cytosol | 40.31 | 13.2 |
| PGSC0003DMT400066714 | Potato | cytosol | 25.58 | 9.4 |
| PGSC0003DMT400066716 | Potato | cytosol | 24.03 | 8.76 |
| PGSC0003DMT400091205 | Potato | cytosol, nucleus, peroxisome | 10.08 | 8.23 |
| PGSC0003DMT400066712 | Potato | cytosol | 5.43 | 4.43 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400088528 | EnsemblPlantsGene:PGSC0003DMG400038099 | Gene3D:2.60.120.330 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 |
| InterPro:Oxoglu/Fe-dep_dioxygenase | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF140 | PFAM:PF03171 | PFscan:PS51471 | PGSC:PGSC0003DMG400038099 |
| SUPFAM:SSF51197 | UniParc:UPI000294D49D | UniProt:M1DG61 | MapMan:50.1.13 | : | : |
Description
Ntc12 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400038099]
Coordinates
chr10:+:17064231..17064828
Molecular Weight (calculated)
14885.7 Da
IEP (calculated)
8.065
GRAVY (calculated)
-0.453
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLNYYPPCQ KPELNLGTKP HYDPTSLTVI HQDSVSGLQV PVDNEWYSIH QNFNAFVVNI GNTFMAVSNR RYKICLHRAV VNNKTPRKSL DFFLCRDNDK
101: VVSPPTELVD YNNPRLYPDS TLPALLEFT
101: VVSPPTELVD YNNPRLYPDS TLPALLEFT
001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI
Arabidopsis Description
GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.