Factsheet for PGSC0003DMT400062314

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006880.2.1	Tomato	cytosol	96.3	96.3
PGSC0003DMT400036523	Potato	cytosol	68.78	83.6
PGSC0003DMT400090397	Potato	cytosol	82.28	83.38
PGSC0003DMT400042644	Potato	cytosol	71.96	80.95
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	33.6	80.38
PGSC0003DMT400086432	Potato	cytosol	32.54	78.85
PGSC0003DMT400071866	Potato	cytosol	75.4	76.0
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	32.01	75.16
PGSC0003DMT400088638	Potato	cytosol	48.68	72.73
KRH38652	Soybean	cytosol	73.02	72.25
VIT_16s0022g02310.t01	Wine grape	cytosol	71.96	71.2
PGSC0003DMT400090198	Potato	mitochondrion	16.67	70.0
KRH09174	Soybean	cytosol	55.56	69.08
KRG91415	Soybean	cytosol	69.05	68.15
PGSC0003DMT400091526	Potato	cytosol	42.33	66.95
KRH35405	Soybean	cytosol	64.02	66.3
PGSC0003DMT400000036	Potato	cytosol	62.96	65.21
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	52.91	64.94
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	61.64	64.54
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	21.96	64.34
HORVU5Hr1G124120.1	Barley	cytosol	61.11	64.17
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	61.64	63.84
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	61.9	63.76
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	52.65	63.58
PGSC0003DMT400089703	Potato	nucleus	23.81	60.0
Os03t0856700-02	Rice	cytosol, mitochondrion	58.47	59.41
EER90481	Sorghum	cytosol	59.52	59.37
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	19.05	57.14
Zm00001d034898_P001	Maize	plastid	60.58	56.68
GSMUA_AchrUn_...	Banana	cytosol	48.41	56.66
HORVU3Hr1G089980.2	Barley	cytosol	51.32	54.34
TraesCS3D01G393900.1	Wheat	cytosol	50.0	53.09
TraesCS3A01G399800.1	Wheat	cytosol	50.26	53.07
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	50.0	52.65
TraesCS3B01G432800.1	Wheat	cytosol	49.74	52.22
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	15.34	51.33
Os07t0169700-01	Rice	plasma membrane	49.74	51.23
EER95912	Sorghum	cytosol	49.74	49.21
Zm00001d007894_P001	Maize	cytosol	50.0	47.97
PGSC0003DMT400090419	Potato	cytosol	19.58	38.34
PGSC0003DMT400066716	Potato	cytosol	28.04	29.94
PGSC0003DMT400066714	Potato	cytosol	26.98	29.06
PGSC0003DMT400066712	Potato	cytosol	9.79	23.42

Protein Annotations

EntrezGene:102584697	MapMan:11.6.1.5	Gene3D:2.60.120.330	EMBL:AJ291453	ProteinID:CAC13036	ProteinID:CAC13036.1
InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
UniProt:M1C8V8	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400024249	PGSC:PGSC0003DMG400024249
EnsemblPlants:PGSC0003DMT400062314	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140	SUPFAM:SSF51197
UniParc:UPI0002963109	RefSeq:XP_006362690.1	:	:	:	:

Description

Gibberellin 20-oxidase-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400024249]

Coordinates

chr3:-:41463794..41465887

Molecular Weight (calculated)

43146.0 Da

IEP (calculated)

6.189

GRAVY (calculated)

-0.400

Length

378 amino acids

Sequence
(BLAST)

001: MAIDCMITNA KSPMIDETKQ FIFDASHMKR ESNIPTQFIW PDHEKPCAVV QELHVPLIDL RGFLSGDSDA AQQASKLVGE ACRSHGFFLV VNHGVDANLI
101: SNAHRYMDTF FDLPLLEKQK AQRKIGEHCG YASSFTGRFS SKLPWKETLS FRYSAEEESS HIVEEYFQRT LGESFNHLGN VYQEYCNSMN TLSLGIMELL
201: GMSLGVEKSH FKEFFEENDS IMRLNYYPPC QKPELTLGTG PHCDPTSLTI LHQDCVGGLQ VFVDDEWRSI SPNFNAFVVN IGDTFMALSN GRYKSCLHRA
301: VVNNKTPRKS LAFFLCPNKD KVVSPPNELV DSNNPRIYPD FTWPTLLEFT QKHYRADMNT LQTFSNWLHD QHNTTTQV

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.