Factsheet for PGSC0003DMT400071866

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g035530.2.1	Tomato	cytosol	94.13	94.89
PGSC0003DMT400086432	Potato	cytosol	32.53	78.21
PGSC0003DMT400062314	Potato	cytosol	76.0	75.4
PGSC0003DMT400036523	Potato	cytosol	61.6	74.28
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	31.47	73.29
PGSC0003DMT400042644	Potato	cytosol	64.8	72.32
PGSC0003DMT400090397	Potato	cytosol	70.93	71.31
PGSC0003DMT400090198	Potato	mitochondrion	17.07	71.11
VIT_16s0022g02310.t01	Wine grape	cytosol	72.27	70.94
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	29.6	70.25
KRH38652	Soybean	cytosol	70.13	68.85
KRH09174	Soybean	cytosol	54.13	66.78
KRG91415	Soybean	cytosol	68.0	66.58
KRH35405	Soybean	cytosol	63.2	64.93
PGSC0003DMT400088638	Potato	cytosol	43.73	64.82
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	21.87	63.57
PGSC0003DMT400000036	Potato	cytosol	61.6	63.29
HORVU5Hr1G124120.1	Barley	cytosol	58.93	61.39
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	58.93	61.22
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	50.67	60.7
PGSC0003DMT400091526	Potato	cytosol	38.67	60.67
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	49.6	60.39
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	58.67	60.27
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	58.93	60.22
EER90481	Sorghum	cytosol	58.93	58.31
Os03t0856700-02	Rice	cytosol, mitochondrion	54.93	55.38
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	18.4	54.76
Zm00001d034898_P001	Maize	plastid	58.4	54.21
GSMUA_AchrUn_...	Banana	cytosol	46.4	53.87
PGSC0003DMT400089703	Potato	nucleus	21.07	52.67
HORVU3Hr1G089980.2	Barley	cytosol	48.53	50.98
TraesCS3A01G399800.1	Wheat	cytosol	47.73	50.0
TraesCS3D01G393900.1	Wheat	cytosol	47.47	50.0
TraesCS3B01G432800.1	Wheat	cytosol	46.93	48.89
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	46.67	48.75
Os07t0169700-01	Rice	plasma membrane	47.47	48.5
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	14.4	47.79
EER95912	Sorghum	cytosol	48.53	47.64
Zm00001d007894_P001	Maize	cytosol	48.8	46.45
PGSC0003DMT400090419	Potato	cytosol	19.2	37.31
PGSC0003DMT400066716	Potato	cytosol	26.93	28.53
PGSC0003DMT400066714	Potato	cytosol	25.6	27.35
PGSC0003DMT400066712	Potato	cytosol	9.33	22.15

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	EMBL:AJ291454	ProteinID:CAC13037	ProteinID:CAC13037.1	InterPro:DIOX_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M1CPF6
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400027963	PGSC:PGSC0003DMG400027963	EnsemblPlants:PGSC0003DMT400071866
PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140	SUPFAM:SSF51197	UniParc:UPI000296780E

Description

Ga20 oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400027963]

Coordinates

chr6:-:36542515..36544842

Molecular Weight (calculated)

42741.1 Da

IEP (calculated)

7.354

GRAVY (calculated)

-0.347

Length

375 amino acids

Sequence
(BLAST)

001: MAIDCMVMPM IQTSSDEKKP LIFDSSVLKH ESNIPRQFIW PDHEKPSGGV PELDVPLIDL GAFLSGDPIA AKRESRLVDE ACKNHGFFLV VNHGVDTNLI
101: SLAHRYMNMF FELPLSNKQK IQRKRGDHCG YASSFTERFS SKLPWKETLS FSYSALQGSS HMVDQYFLKT MGEDFSHIGK FYQEYCNAMS TLSSGIMELL
201: GESLGVSKNH FKQFFEENES IMRLNYYPTC LKPDLALGTG PHCDPTSLTI LHQDSVSGLQ VFMDNQWRSI SPNLSAFVVN IGDTFMALSN GRYKSCLHRA
301: VVNNKTPRKS LAFFLCPKKD KVVRPPAELV DSNNPRIYPD FTWPTLLEFT QKHYRADTNT LQFFSNWLQQ RTTEV

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.