Factsheet for PGSC0003DMT400086432

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090198	Potato	mitochondrion	42.95	74.44
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	63.46	61.49
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	50.0	60.47
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	36.54	50.44
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	39.74	49.21
PGSC0003DMT400042644	Potato	cytosol	92.31	42.86
PGSC0003DMT400091526	Potato	cytosol	59.62	38.91
PGSC0003DMT400090397	Potato	cytosol	92.31	38.61
PGSC0003DMT400036523	Potato	cytosol	67.95	34.08
PGSC0003DMT400062314	Potato	cytosol	78.85	32.54
PGSC0003DMT400071866	Potato	cytosol	78.21	32.53
PGSC0003DMT400090419	Potato	cytosol	39.1	31.61
VIT_16s0022g02310.t01	Wine grape	cytosol	76.92	31.41
KRH35405	Soybean	cytosol	71.79	30.68
PGSC0003DMT400089703	Potato	nucleus	29.49	30.67
KRH38652	Soybean	cytosol	73.72	30.1
KRG91415	Soybean	cytosol	73.08	29.77
PGSC0003DMT400088638	Potato	cytosol	47.44	29.25
HORVU5Hr1G124120.1	Barley	cytosol	66.67	28.89
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	56.41	28.57
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	66.03	28.53
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	66.03	28.22
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	66.03	28.07
PGSC0003DMT400000036	Potato	cytosol	65.38	27.95
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	55.13	27.48
GSMUA_AchrUn_...	Banana	cytosol	56.41	27.24
KRH09174	Soybean	cytosol	52.56	26.97
EER90481	Sorghum	cytosol	64.74	26.65
Os03t0856700-02	Rice	cytosol, mitochondrion	62.18	26.08
Os07t0169700-01	Rice	plasma membrane	58.33	24.8
Zm00001d034898_P001	Maize	plastid	64.1	24.75
TraesCS3D01G393900.1	Wheat	cytosol	56.41	24.72
HORVU3Hr1G089980.2	Barley	cytosol	56.41	24.65
TraesCS3A01G399800.1	Wheat	cytosol	56.41	24.58
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	55.77	24.23
TraesCS3B01G432800.1	Wheat	cytosol	55.77	24.17
EER95912	Sorghum	cytosol	55.13	22.51
Zm00001d007894_P001	Maize	cytosol	55.13	21.83
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	21.15	20.89
PGSC0003DMT400066716	Potato	cytosol	32.69	14.41
PGSC0003DMT400066714	Potato	cytosol	30.13	13.39
PGSC0003DMT400066712	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400086432	EnsemblPlantsGene:PGSC0003DMG400036003	Gene3D:2.60.120.330	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
InterPro:Oxoglu/Fe-dep_dioxygenase	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140	PFAM:PF03171	PFscan:PS51471	PGSC:PGSC0003DMG400036003
SUPFAM:SSF51197	UniParc:UPI000296E248	UniProt:M1DBQ9	MapMan:11.6.1.5	:	:

Description

Gibberellin 20-oxidase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400036003]

Coordinates

chr9:-:13844854..13845532

Molecular Weight (calculated)

17937.4 Da

IEP (calculated)

6.658

GRAVY (calculated)

-0.269

Length

156 amino acids

Sequence
(BLAST)

001: MRLNYYPSCL KPELTLGTGP HYDPTSLTVL HQDCVSGLQV FVDNEWYSIN PNFNAFVVNI GDTFMALLNG RYKSCLHRAV VNNTTPRKSL AFFLCPDKDK
101: VVCPPTKLVD YNNPRLYLDF TWPVLLEFTQ KHHRAETNTL QAFSMLLQEN NAEAYE

Best Arabidopsis Sequence Match ( AT1G44090.1 )
(BLAST)

001: MCIYASRQTV CPYLTPFKVK RPKSREMNSS DVNFSLLQSQ PNVPAEFFWP EKDVAPSEGD LDLPIIDLSG FLNGNEAETQ LAAKAVKKAC MAHGTFLVVN
101: HGFKSGLAEK ALEISSLFFG LSKDEKLRAY RIPGNISGYT AGHSQRFSSN LPWNETLTLA FKKGPPHVVE DFLTSRLGNH RQEIGQVFQE FCDAMNGLVM
201: DLMELLGISM GLKDRTYYRR FFEDGSGIFR CNYYPPCKQP EKALGVGPHN DPTAITVLLQ DDVVGLEVFA AGSWQTVRPR PGALVVNVGD TFMALSNGNY
301: RSCYHRAVVN KEKVRRSLVF FSCPREDKII VPPPELVEGE EASRKYPDFT WAQLQKFTQS GYRVDNTTLH NFSSWLVSNS DKKST

Arabidopsis Description

GA20OX5Gibberellin 20 oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.