Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 2
- mitochondrion 2
- peroxisome 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400088528 | Potato | cytosol, peroxisome, plastid | 46.02 | 40.31 |
| PGSC0003DMT400086432 | Potato | cytosol | 50.44 | 36.54 |
| PGSC0003DMT400090198 | Potato | mitochondrion | 27.43 | 34.44 |
| Solyc10g045770.1.1 | Tomato | cytosol | 21.24 | 22.02 |
| PGSC0003DMT400091526 | Potato | cytosol | 46.02 | 21.76 |
| PGSC0003DMT400097234 | Potato | cytosol, mitochondrion, plastid | 23.01 | 20.63 |
| PGSC0003DMT400092587 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 28.32 | 19.88 |
| PGSC0003DMT400042644 | Potato | cytosol | 50.44 | 16.96 |
| PGSC0003DMT400090397 | Potato | cytosol | 53.1 | 16.09 |
| PGSC0003DMT400036523 | Potato | cytosol | 44.25 | 16.08 |
| PGSC0003DMT400090419 | Potato | cytosol | 27.43 | 16.06 |
| PGSC0003DMT400062314 | Potato | cytosol | 51.33 | 15.34 |
| KRH35405 | Soybean | cytosol | 49.56 | 15.34 |
| KRH38652 | Soybean | cytosol | 51.33 | 15.18 |
| GSMUA_Achr8P19120_001 | Banana | cytosol, extracellular, peroxisome | 40.71 | 14.94 |
| KRG91415 | Soybean | cytosol | 49.56 | 14.62 |
| PGSC0003DMT400071866 | Potato | cytosol | 47.79 | 14.4 |
| VIT_16s0022g02310.t01 | Wine grape | cytosol | 48.67 | 14.4 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.71 | 14.24 |
| GSMUA_Achr2P01010_001 | Banana | cytosol, peroxisome, plastid | 38.94 | 14.06 |
| PGSC0003DMT400088638 | Potato | cytosol | 30.09 | 13.44 |
| PGSC0003DMT400000036 | Potato | cytosol | 43.36 | 13.42 |
| HORVU5Hr1G124120.1 | Barley | cytosol | 42.48 | 13.33 |
| TraesCS5B01G560300.1 | Wheat | cytosol, peroxisome, plastid | 42.48 | 13.08 |
| TraesCS5D01G566200.1 | Wheat | cytosol, peroxisome, plastid | 41.59 | 13.02 |
| TraesCS4A01G319100.1 | Wheat | cytosol, peroxisome, plastid | 41.59 | 12.88 |
| HORVU3Hr1G089980.2 | Barley | cytosol | 39.82 | 12.61 |
| Os07t0169700-01 | Rice | plasma membrane | 39.82 | 12.26 |
| EER90481 | Sorghum | cytosol | 40.71 | 12.14 |
| TraesCS3D01G393900.1 | Wheat | cytosol | 38.05 | 12.08 |
| TraesCS3D01G394000.1 | Wheat | cytosol, peroxisome, plastid | 38.05 | 11.98 |
| TraesCS3A01G399800.1 | Wheat | cytosol | 37.17 | 11.73 |
| TraesCS3B01G432800.1 | Wheat | cytosol | 37.17 | 11.67 |
| Zm00001d034898_P001 | Maize | plastid | 41.59 | 11.63 |
| EER95912 | Sorghum | cytosol | 38.05 | 11.26 |
| Zm00001d007894_P001 | Maize | cytosol | 37.17 | 10.66 |
| Os03t0856700-02 | Rice | cytosol, mitochondrion | 34.51 | 10.48 |
| KRH09174 | Soybean | cytosol | 24.78 | 9.21 |
| PGSC0003DMT400066714 | Potato | cytosol | 23.89 | 7.69 |
| PGSC0003DMT400066716 | Potato | cytosol | 22.12 | 7.06 |
| PGSC0003DMT400089703 | Potato | nucleus | 6.19 | 4.67 |
| PGSC0003DMT400091205 | Potato | cytosol, nucleus, peroxisome | 4.42 | 3.16 |
| PGSC0003DMT400066712 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400086504 | EnsemblPlantsGene:PGSC0003DMG400036075 | Gene3D:2.60.120.330 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 |
| InterPro:Oxoglu/Fe-dep_dioxygenase | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF140 | PFAM:PF03171 | PGSC:PGSC0003DMG400036075 | SUPFAM:SSF51197 |
| UniParc:UPI0002954D96 | UniProt:M1DBW8 | MapMan:35.1 | : | : | : |
Description
Gibberellin 20-oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400036075]
Coordinates
chr10:+:16888933..16893675
Molecular Weight (calculated)
12856.2 Da
IEP (calculated)
8.066
GRAVY (calculated)
-0.449
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQLKSGLQV FVDNEWYFIC QNFNAFVVNI GDTFMALSNG RYKSCLHRKL VNNKTARKSL PFFLSWCRER ASGRGNERVT PAGNGSPVQN DPIYENSLAH
101: HEETEEGVYV VNV
101: HEETEEGVYV VNV
001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI
Arabidopsis Description
GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.