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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • peroxisome 1
  • cytosol 3
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:peroxisome
Plant-mPloc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400090198 Potato mitochondrion 26.78 71.11
PGSC0003DMT400088528 Potato cytosol, peroxisome, plastid 37.24 68.99
PGSC0003DMT400089703 Potato nucleus 38.08 60.67
PGSC0003DMT400086432 Potato cytosol 38.91 59.62
PGSC0003DMT400088638 Potato cytosol 54.39 51.38
PGSC0003DMT400097234 Potato cytosol, mitochondrion, plastid 24.27 46.03
PGSC0003DMT400086504 Potato cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 21.76 46.02
PGSC0003DMT400090397 Potato cytosol 70.29 45.04
PGSC0003DMT400062314 Potato cytosol 66.95 42.33
PGSC0003DMT400036523 Potato cytosol 54.81 42.12
PGSC0003DMT400092587 Potato cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole 28.03 41.61
Solyc10g045690.1.1 Tomato cytosol, nucleus, peroxisome 33.05 41.58
PGSC0003DMT400042644 Potato cytosol 56.49 40.18
PGSC0003DMT400071866 Potato cytosol 60.67 38.67
KRH38652 Soybean cytosol 59.83 37.43
VIT_16s0022g02310.t01 Wine grape cytosol 57.32 35.86
KRG91415 Soybean cytosol 55.65 34.73
HORVU5Hr1G124120.1 Barley cytosol 50.63 33.61
PGSC0003DMT400091205 Potato cytosol, nucleus, peroxisome 22.18 33.54
TraesCS5D01G566200.1 Wheat cytosol, peroxisome, plastid 50.21 33.24
TraesCS5B01G560300.1 Wheat cytosol, peroxisome, plastid 50.63 32.97
PGSC0003DMT400000036 Potato cytosol 50.21 32.88
TraesCS4A01G319100.1 Wheat cytosol, peroxisome, plastid 50.21 32.88
KRH35405 Soybean cytosol 49.37 32.33
EER90481 Sorghum cytosol 49.37 31.13
Os03t0856700-02 Rice cytosol, mitochondrion 48.12 30.91
Zm00001d034898_P001 Maize plastid 49.79 29.46
KRH09174 Soybean cytosol 37.24 29.28
GSMUA_Achr8P19120_001 Banana cytosol, extracellular, peroxisome 37.66 29.22
Os07t0169700-01 Rice plasma membrane 43.1 28.07
TraesCS3D01G394000.1 Wheat cytosol, peroxisome, plastid 41.84 27.86
TraesCS3D01G393900.1 Wheat cytosol 41.42 27.81
HORVU3Hr1G089980.2 Barley cytosol 41.42 27.73
TraesCS3A01G399800.1 Wheat cytosol 41.42 27.65
GSMUA_Achr2P01010_001 Banana cytosol, peroxisome, plastid 35.56 27.16
TraesCS3B01G432800.1 Wheat cytosol 40.59 26.94
GSMUA_AchrUn_... Banana cytosol 35.98 26.63
EER95912 Sorghum cytosol 39.75 24.87
Zm00001d007894_P001 Maize cytosol 39.75 24.11
PGSC0003DMT400090419 Potato cytosol 16.74 20.73
PGSC0003DMT400066714 Potato cytosol 20.5 13.96
PGSC0003DMT400066716 Potato cytosol 20.08 13.56
PGSC0003DMT400066712 Potato cytosol 8.37 12.66
Protein Annotations
EnsemblPlants:PGSC0003DMT400091526EnsemblPlantsGene:PGSC0003DMG400041097Gene3D:2.60.120.330GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0016491GO:GO:0055114InterPro:DIOX_NInterPro:IPNS-likeInterPro:IPR005123
InterPro:IPR027443InterPro:Oxoglu/Fe-dep_dioxygenasePANTHER:PTHR10209PANTHER:PTHR10209:SF140PFAM:PF03171PFAM:PF14226
PGSC:PGSC0003DMG400041097SUPFAM:SSF51197UniParc:UPI0002962324UniProt:M1DMT9MapMan:50.1.13:
Description
Gibberellin 20-oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400041097]
Coordinates
chr10:+:16198979..16202207
Molecular Weight (calculated)
27775.9 Da
IEP (calculated)
7.566
GRAVY (calculated)
-0.438
Length
239 amino acids
Sequence
(BLAST)
001: MWNHLRCEGN LSTFVELEVA FEVNIVNLST LDNVNQRVDA NLIANSHRYM DMFFDMPLCE KLKAQRKIGE HCGYATSFTG RFSSKLPWKE TPSLRYSAKE
101: GSSHIVEEYF QRTLGESFNN LGLQVLVDNE WYSIRQNFNA FVVNIGNTFM AVSNYRYKIC LHRAVVNNKT TRKSIALFLC PDKDKVVSPP TELVDYNNPR
201: PYPDFTRHVL LEFTKKHHRA DTNTLQAFSM WLQDNDVES
Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)
001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI
Arabidopsis Description
GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.