Factsheet for PGSC0003DMT400090198

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13228	Canola	cytosol	36.67	44.59
PGSC0003DMT400086432	Potato	cytosol	74.44	42.95
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	72.22	40.37
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	53.33	38.1
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	54.44	37.98
PGSC0003DMT400089703	Potato	nucleus	47.78	28.67
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	34.44	27.43
PGSC0003DMT400091526	Potato	cytosol	71.11	26.78
PGSC0003DMT400088638	Potato	cytosol	73.33	26.09
PGSC0003DMT400042644	Potato	cytosol	76.67	20.54
PGSC0003DMT400090397	Potato	cytosol	75.56	18.23
PGSC0003DMT400071866	Potato	cytosol	71.11	17.07
PGSC0003DMT400062314	Potato	cytosol	70.0	16.67
VIT_16s0022g02310.t01	Wine grape	cytosol	67.78	15.97
KRH35405	Soybean	cytosol	63.33	15.62
KRH38652	Soybean	cytosol	64.44	15.18
KRG91415	Soybean	cytosol	64.44	15.14
PGSC0003DMT400036523	Potato	cytosol	51.11	14.79
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	57.78	14.17
HORVU5Hr1G124120.1	Barley	cytosol	56.67	14.17
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	56.67	14.13
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	56.67	13.97
PGSC0003DMT400000036	Potato	cytosol	55.56	13.7
EER90481	Sorghum	cytosol	55.56	13.19
Os03t0856700-02	Rice	cytosol, mitochondrion	54.44	13.17
Zm00001d034898_P001	Maize	plastid	54.44	12.13
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	40.0	11.69
Os07t0169700-01	Rice	plasma membrane	46.67	11.44
HORVU3Hr1G089980.2	Barley	cytosol	44.44	11.2
KRH09174	Soybean	cytosol	37.78	11.18
TraesCS3A01G399800.1	Wheat	cytosol	44.44	11.17
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	44.44	11.14
TraesCS3B01G432800.1	Wheat	cytosol	44.44	11.11
TraesCS3D01G393900.1	Wheat	cytosol	43.33	10.96
PGSC0003DMT400090419	Potato	cytosol	23.33	10.88
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	37.78	10.86
GSMUA_AchrUn_...	Banana	cytosol	37.78	10.53
EER95912	Sorghum	cytosol	41.11	9.69
Zm00001d007894_P001	Maize	cytosol	42.22	9.64
PGSC0003DMT400066714	Potato	cytosol	21.11	5.41
PGSC0003DMT400066716	Potato	cytosol	18.89	4.8
CDY13227	Canola	cytosol	2.22	1.17
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	0.0	0.0
PGSC0003DMT400066712	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400090198	EnsemblPlantsGene:PGSC0003DMG400039769	Gene3D:2.60.120.330	InterPro:IPNS-like	InterPro:IPR027443	PANTHER:PTHR10209
PANTHER:PTHR10209:SF140	PGSC:PGSC0003DMG400039769	SUPFAM:SSF51197	UniParc:UPI000296EFDE	UniProt:M1DJV9	MapMan:35.1

Description

Ntc12 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400039769]

Coordinates

chr10:+:16915355..16915833

Molecular Weight (calculated)

10486.5 Da

IEP (calculated)

8.486

GRAVY (calculated)

-0.506

Length

90 amino acids

Sequence
(BLAST)

1: MAISNGRYKS CLYRALVNNK TPKKSLPFFL CLDKDKVVSR PTELVDYNTP RLDTDFTWPT LLEFTQKHHR ADTCTVKAFS MWLQDDNVEA

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.