Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400091205 | Potato | cytosol, nucleus, peroxisome | 48.87 | 96.2 |
| Solyc06g050110.1.1 | Tomato | cytosol | 89.71 | 76.86 |
| PGSC0003DMT400090397 | Potato | cytosol | 83.28 | 69.44 |
| PGSC0003DMT400062314 | Potato | cytosol | 83.6 | 68.78 |
| PGSC0003DMT400086432 | Potato | cytosol | 34.08 | 67.95 |
| PGSC0003DMT400042644 | Potato | cytosol | 71.38 | 66.07 |
| PGSC0003DMT400092587 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 32.48 | 62.73 |
| PGSC0003DMT400071866 | Potato | cytosol | 74.28 | 61.6 |
| PGSC0003DMT400088528 | Potato | cytosol, peroxisome, plastid | 25.4 | 61.24 |
| PGSC0003DMT400088638 | Potato | cytosol | 49.2 | 60.47 |
| KRH38652 | Soybean | cytosol | 72.03 | 58.64 |
| VIT_16s0022g02310.t01 | Wine grape | cytosol | 71.38 | 58.12 |
| KRG91415 | Soybean | cytosol | 69.13 | 56.14 |
| PGSC0003DMT400091526 | Potato | cytosol | 42.12 | 54.81 |
| KRH09174 | Soybean | cytosol | 53.38 | 54.61 |
| KRH35405 | Soybean | cytosol | 63.99 | 54.52 |
| TraesCS5D01G566200.1 | Wheat | cytosol, peroxisome, plastid | 62.7 | 54.02 |
| HORVU5Hr1G124120.1 | Barley | cytosol | 62.06 | 53.61 |
| PGSC0003DMT400000036 | Potato | cytosol | 62.7 | 53.42 |
| TraesCS4A01G319100.1 | Wheat | cytosol, peroxisome, plastid | 62.06 | 52.88 |
| TraesCS5B01G560300.1 | Wheat | cytosol, peroxisome, plastid | 62.38 | 52.86 |
| GSMUA_Achr8P19120_001 | Banana | cytosol, extracellular, peroxisome | 51.77 | 52.27 |
| GSMUA_Achr2P01010_001 | Banana | cytosol, peroxisome, plastid | 52.09 | 51.76 |
| PGSC0003DMT400090198 | Potato | mitochondrion | 14.79 | 51.11 |
| EER90481 | Sorghum | cytosol | 61.09 | 50.13 |
| Os03t0856700-02 | Rice | cytosol, mitochondrion | 57.88 | 48.39 |
| GSMUA_AchrUn_... | Banana | cytosol | 49.52 | 47.68 |
| Zm00001d034898_P001 | Maize | plastid | 61.09 | 47.03 |
| PGSC0003DMT400089703 | Potato | nucleus | 22.19 | 46.0 |
| PGSC0003DMT400097234 | Potato | cytosol, mitochondrion, plastid | 18.33 | 45.24 |
| PGSC0003DMT400086504 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 16.08 | 44.25 |
| TraesCS3D01G393900.1 | Wheat | cytosol | 50.48 | 44.1 |
| TraesCS3D01G394000.1 | Wheat | cytosol, peroxisome, plastid | 49.84 | 43.18 |
| HORVU3Hr1G089980.2 | Barley | cytosol | 49.52 | 43.14 |
| TraesCS3A01G399800.1 | Wheat | cytosol | 49.52 | 43.02 |
| TraesCS3B01G432800.1 | Wheat | cytosol | 49.2 | 42.5 |
| Os07t0169700-01 | Rice | plasma membrane | 49.84 | 42.23 |
| EER95912 | Sorghum | cytosol | 48.55 | 39.53 |
| Zm00001d007894_P001 | Maize | cytosol | 48.87 | 38.58 |
| PGSC0003DMT400090419 | Potato | cytosol | 21.54 | 34.72 |
| PGSC0003DMT400066716 | Potato | cytosol | 30.23 | 26.55 |
| PGSC0003DMT400066714 | Potato | cytosol | 28.94 | 25.64 |
| PGSC0003DMT400066712 | Potato | cytosol | 10.93 | 21.52 |
Protein Annotations
| MapMan:11.6.1.5 | Gene3D:2.60.120.330 | InterPro:DIOX_N | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0046872 | GO:GO:0055114 | InterPro:IPNS-like |
| InterPro:IPR005123 | InterPro:IPR027443 | UniProt:M1B3S4 | InterPro:Oxoglu/Fe-dep_dioxygenase | PFAM:PF03171 | PFAM:PF14226 |
| EnsemblPlantsGene:PGSC0003DMG400014071 | PGSC:PGSC0003DMG400014071 | EnsemblPlants:PGSC0003DMT400036523 | PRINTS:PR00682 | PFscan:PS51471 | PANTHER:PTHR10209 |
| PANTHER:PTHR10209:SF140 | SUPFAM:SSF51197 | UniParc:UPI000295544A | : | : | : |
Description
Ntc12 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014071]
Coordinates
chr9:+:44130132..44131845
Molecular Weight (calculated)
35285.8 Da
IEP (calculated)
6.118
GRAVY (calculated)
-0.301
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHDEKDCAI AQELPVPLID LGGFFSGDPA MAQQASRLVG EACRSHGFFL VVNHGVDANL ISNAHRNMDM FFNLPLSEKQ KAERKIGEHC GYASSFTGTF
101: LSKLPWKETL SFQYSAKEDS SHIVEEYFQR TMGESFNNLG NVYQEYCNSM STLSLSIMEL LGMSLGVQKN HFKDYFKDNE SIMRINYYPP CQNPELTLGT
201: WPHYDPTSLT ILHQDCVSGL QVFVDNEWHS INPNSNAFVV NIGDTFMALS NGIFKSCLHR AVVNNYSPRK SLVFFLCPNK DKVVRSPTEL VDSNNPRIYP
301: DFTWPTLLQF T
101: LSKLPWKETL SFQYSAKEDS SHIVEEYFQR TMGESFNNLG NVYQEYCNSM STLSLSIMEL LGMSLGVQKN HFKDYFKDNE SIMRINYYPP CQNPELTLGT
201: WPHYDPTSLT ILHQDCVSGL QVFVDNEWHS INPNSNAFVV NIGDTFMALS NGIFKSCLHR AVVNNYSPRK SLVFFLCPNK DKVVRSPTEL VDSNNPRIYP
301: DFTWPTLLQF T
001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI
Arabidopsis Description
GA20OX2Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39111]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.