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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • peroxisome 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, peroxisome
MultiLoc:peroxisome
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G566200.1 Wheat cytosol, peroxisome, plastid 96.11 95.84
TraesCS5B01G560300.1 Wheat cytosol, peroxisome, plastid 95.83 94.01
TraesCS4A01G319100.1 Wheat cytosol, peroxisome, plastid 94.72 93.42
GSMUA_Achr8P19120_001 Banana cytosol, extracellular, peroxisome 62.22 72.73
GSMUA_Achr2P01010_001 Banana cytosol, peroxisome, plastid 62.5 71.89
EER90481 Sorghum cytosol 74.44 70.71
Os03t0856700-02 Rice cytosol, mitochondrion 71.39 69.09
PGSC0003DMT400086432 Potato cytosol 28.89 66.67
Zm00001d034898_P001 Maize plastid 73.33 65.35
PGSC0003DMT400092587 Potato cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole 28.61 63.98
VIT_16s0022g02310.t01 Wine grape cytosol 66.11 62.3
CDY49714 Canola cytosol, nucleus, peroxisome 60.56 62.29
GSMUA_AchrUn_... Banana cytosol 55.83 62.23
KRG91415 Soybean cytosol 66.11 62.14
PGSC0003DMT400036523 Potato cytosol 53.61 62.06
Bra019165.1-P Field mustard cytosol 60.28 62.0
CDY72226 Canola mitochondrion 44.44 61.78
VIT_15s0048g01320.t01 Wine grape cytosol 65.56 61.46
PGSC0003DMT400062314 Potato cytosol 64.17 61.11
KRH35405 Soybean cytosol 61.94 61.1
Solyc03g006880.2.1 Tomato cytosol 63.89 60.85
KRH38652 Soybean cytosol 64.44 60.73
PGSC0003DMT400090397 Potato cytosol 61.39 59.25
PGSC0003DMT400071866 Potato cytosol 61.39 58.93
PGSC0003DMT400042644 Potato cytosol 55.0 58.93
Solyc11g072310.1.1 Tomato cytosol 61.67 58.58
KRH09174 Soybean cytosol 49.44 58.55
Solyc06g035530.2.1 Tomato cytosol 60.28 58.33
PGSC0003DMT400091205 Potato cytosol, nucleus, peroxisome 25.56 58.23
Solyc01g093980.2.1 Tomato cytosol 58.33 57.69
HORVU3Hr1G089980.2 Barley cytosol 56.94 57.42
CDX92707 Canola cytosol, nucleus, peroxisome 60.83 57.18
Solyc09g009110.2.1 Tomato cytosol 60.0 57.14
AT4G25420.1 Thale cress cytosol, nucleus, peroxisome 59.72 57.03
PGSC0003DMT400000036 Potato cytosol 57.78 56.99
PGSC0003DMT400090198 Potato mitochondrion 14.17 56.67
CDY55723 Canola cytosol, nucleus, peroxisome 59.17 56.65
CDX94446 Canola cytosol, nucleus, peroxisome 59.17 56.65
Bra013890.1-P Field mustard cytosol 58.89 56.38
Solyc06g050110.1.1 Tomato cytosol 56.67 56.2
CDY27101 Canola cytosol, nucleus, peroxisome 58.61 55.97
KRH65199 Soybean cytosol 59.17 55.76
Bra022565.1-P Field mustard cytosol 58.33 55.7
CDY58871 Canola cytosol, endoplasmic reticulum, peroxisome 58.33 55.56
AT5G51810.1 Thale cress cytosol, nucleus, peroxisome 58.33 55.56
CDX91609 Canola cytosol, nucleus, peroxisome 58.33 55.56
CDX81038 Canola cytosol, nucleus, peroxisome 58.06 55.29
Bra005927.1-P Field mustard cytosol 50.0 55.21
CDX98998 Canola cytosol, nucleus, peroxisome 57.22 54.35
CDX99892 Canola cytosol, nucleus, peroxisome 57.22 54.35
CDX70015 Canola cytosol, nucleus, peroxisome 57.22 54.35
CDY00499 Canola cytosol, nucleus, peroxisome 57.22 54.21
CDX99893 Canola cytosol, nucleus, peroxisome 57.22 54.21
Bra028277.1-P Field mustard cytosol, nucleus, peroxisome 57.22 54.21
Bra009285.1-P Field mustard cytosol 56.94 54.09
KRH48309 Soybean cytosol 59.17 53.79
Bra028706.1-P Field mustard cytosol 56.39 53.56
CDY14054 Canola cytosol, nucleus, peroxisome 56.39 53.56
CDY05017 Canola cytosol, nucleus, peroxisome 56.39 53.56
PGSC0003DMT400088638 Potato cytosol 37.5 53.36
AT5G07200.1 Thale cress cytosol, nucleus, peroxisome 56.11 53.16
Solyc10g045690.1.1 Tomato cytosol, nucleus, peroxisome 28.06 53.16
AT1G60980.1 Thale cress cytosol, mitochondrion, peroxisome 55.28 52.93
PGSC0003DMT400088528 Potato cytosol, peroxisome, plastid 18.89 52.71
CDY00263 Canola cytosol, nucleus, peroxisome 40.83 52.69
Bra027106.1-P Field mustard cytosol 53.89 51.6
PGSC0003DMT400091526 Potato cytosol 33.61 50.63
Bra039251.1-P Field mustard cytosol 51.11 49.2
CDY64867 Canola cytosol 50.83 48.93
CDY52529 Canola cytosol, nucleus, peroxisome 51.67 48.82
CDY13228 Canola cytosol 10.0 48.65
Bra010064.1-P Field mustard cytosol 50.83 48.54
Bra031467.1-P Field mustard cytosol 50.56 48.28
PGSC0003DMT400097234 Potato cytosol, mitochondrion, plastid 16.67 47.62
CDY64866 Canola cytosol, nucleus, peroxisome 39.72 46.13
CDY60083 Canola vacuole 51.39 46.02
CDY12880 Canola cytosol, nucleus, vacuole 53.89 45.86
CDY44829 Canola cytosol 49.72 45.78
HORVU3Hr1G090980.3 Barley plastid 52.5 45.65
Solyc10g045770.1.1 Tomato cytosol 13.61 44.95
Solyc10g046820.1.1 Tomato cytosol, nucleus, peroxisome 23.61 43.15
PGSC0003DMT400086504 Potato cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 13.33 42.48
PGSC0003DMT400089703 Potato nucleus 17.5 42.0
CDY13227 Canola cytosol 19.17 40.35
HORVU1Hr1G063780.4 Barley cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole 41.67 36.06
HORVU4Hr1G013840.1 Barley cytosol 28.06 26.23
Protein Annotations
MapMan:11.6.1.5Gene3D:2.60.120.330UniProt:A0A287T1B5InterPro:DIOX_NGO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0046872GO:GO:0055114
EnsemblPlantsGene:HORVU5Hr1G124120EnsemblPlants:HORVU5Hr1G124120.1InterPro:IPNS-likeInterPro:IPR005123InterPro:IPR027443InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171PFAM:PF14226PFscan:PS51471PANTHER:PTHR10209PANTHER:PTHR10209:SF140SUPFAM:SSF51197
UniParc:UPI000B46F0C8:::::
Description
GA 20-oxidase 1 [Source:UniProtKB/TrEMBL;Acc:A0A287T1B5]
Coordinates
chrchr5H:-:665299242..665300926
Molecular Weight (calculated)
40324.1 Da
IEP (calculated)
6.890
GRAVY (calculated)
-0.276
Length
360 amino acids
Sequence
(BLAST)
001: MVQPVFDAAV LSGRTDIPSQ FIWPEGESPT PDATEEMHVP LIDIGGMLSG DPRAAAEVTR LVGEACERHG FFQVVNHGID AQLLADAHRC VDAFFTMPLP
101: EKQRALRRPG ESCGYASSFT GRFASKLPWK ETLSFRSCPS DPALVVDYIV ATLGEDHRRL REVYARYCSE MSRLSLEIME VLGESLGVGR AHYRRFFEGN
201: ESIMRLNYYP PCQRPLETLG TGPHCDPTSL TILHQDDVGG LQVHTDGRWR SIRPRADAFV VNIGDTFMAL SNGRYKSCLH RAVVNSRVPR KSLAFFLCPE
301: MDKVVAPPGT LVDAANPRAY PDFTWRSLLD FTQKHYRADM KTLEVFSSWV VQQQPASART
Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)
001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI
Arabidopsis Description
GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.