CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	97.35	97.35
Bra005927.1-P	Field mustard	cytosol	83.33	96.63
CDX70015	Canola	cytosol, nucleus, peroxisome	89.95	89.71
CDX98998	Canola	cytosol, nucleus, peroxisome	89.42	89.18
CDY14054	Canola	cytosol, nucleus, peroxisome	88.89	88.65
CDY05017	Canola	cytosol, nucleus, peroxisome	87.83	87.6
AT5G07200.1	Thale cress	cytosol, nucleus, peroxisome	87.04	86.58
CDY64867	Canola	cytosol	67.46	68.18
CDY72226	Canola	mitochondrion	46.56	67.95
CDY64866	Canola	cytosol, nucleus, peroxisome	53.7	65.48
CDY49714	Canola	cytosol, nucleus, peroxisome	60.32	65.14
CDY00263	Canola	cytosol, nucleus, peroxisome	47.62	64.52
CDY60083	Canola	vacuole	67.99	63.93
CDY12880	Canola	cytosol, nucleus, vacuole	70.9	63.36
CDY44829	Canola	cytosol	65.08	62.92
CDY27101	Canola	cytosol, nucleus, peroxisome	61.38	61.54
CDX92707	Canola	cytosol, nucleus, peroxisome	61.9	61.1
CDY52529	Canola	cytosol, nucleus, peroxisome	61.38	60.89
CDY55723	Canola	cytosol, nucleus, peroxisome	60.32	60.64
CDX91609	Canola	cytosol, nucleus, peroxisome	60.58	60.58
CDX99892	Canola	cytosol, nucleus, peroxisome	60.32	60.16
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	48.94	60.06
CDX99893	Canola	cytosol, nucleus, peroxisome	60.32	60.0
CDX94446	Canola	cytosol, nucleus, peroxisome	59.52	59.84
CDY00499	Canola	cytosol, nucleus, peroxisome	60.05	59.74
PGSC0003DMT400000036	Potato	cytosol	56.88	58.9
Solyc01g093980.2.1	Tomato	cytosol	56.61	58.79
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	48.41	58.47
VIT_15s0048g01320.t01	Wine grape	cytosol	58.99	58.07
HORVU5Hr1G124120.1	Barley	cytosol	55.29	58.06
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	55.29	57.89
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	55.03	56.99
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	55.29	56.95
KRH65199	Soybean	cytosol	56.08	55.5
EER90481	Sorghum	cytosol	55.29	55.15
KRH48309	Soybean	cytosol	56.88	54.29
CDY13228	Canola	cytosol	10.58	54.05
Os03t0856700-02	Rice	cytosol, mitochondrion	52.65	53.49
GSMUA_AchrUn_...	Banana	cytosol	45.5	53.25
CDY13227	Canola	cytosol	23.55	52.05
Zm00001d034898_P001	Maize	plastid	54.23	50.74
TraesCS3D01G393900.1	Wheat	cytosol	47.62	50.56
TraesCS3A01G399800.1	Wheat	cytosol	47.35	50.0
Os07t0169700-01	Rice	plasma membrane	48.15	49.59
HORVU3Hr1G089980.2	Barley	cytosol	46.83	49.58
TraesCS3B01G432800.1	Wheat	cytosol	47.09	49.44
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	46.83	49.3
CDY71240	Canola	cytosol, peroxisome, plastid	34.39	48.69
EER95912	Sorghum	cytosol	45.77	45.29
Zm00001d007894_P001	Maize	cytosol	45.77	43.91
CDY70184	Canola	cytosol	35.45	41.1
CDY36334	Canola	cytosol	11.64	36.07
CDY69351	Canola	cytosol, peroxisome	19.84	33.19
CDX92296	Canola	cytosol, nucleus, peroxisome	28.04	30.37
CDX99287	Canola	cytoskeleton, cytosol, peroxisome	27.51	29.89
CDY22995	Canola	cytosol	27.51	29.46
CDY22994	Canola	cytosol	27.51	29.46
CDX82318	Canola	cytosol	27.51	29.46
CDX82317	Canola	cytosol	27.51	29.46
CDX99288	Canola	cytosol	27.25	29.26
CDX92294	Canola	cytosol	26.98	28.98

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:A0A078D158	EnsemblPlants:CDX81038	ProteinID:CDX81038	ProteinID:CDX81038.1
InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00134472001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140
SUPFAM:SSF51197	UniParc:UPI0004EE1C18	:	:	:	:

Description

BnaC03g02920D

Coordinates

chrLK031823:-:1404787..1406558

Molecular Weight (calculated)

43326.3 Da

IEP (calculated)

5.644

GRAVY (calculated)

-0.465

Length

378 amino acids

Sequence
(BLAST)

001: MAMECIATLP QRFNENKTKE DPSNFDANLL NQQSNHIPQQ FVWPDHEKPT DDVQPLQVPL IDLAGFLSGD SVLVSEATRL VSEASKKHGF FLVTNHGIDE
101: TLLSRAYLFM DSFFKAPACE KQKAQRTWGE SSGYASSFVE RFSSKLPWKE TLSFKFSPVE KCHSQTVKDF VSEKMGYGYE ELGKVYQEYA EAMNILSLKI
201: MELLGMSLGI ERRHFREFFE DNESILRLNY YPQCKQPDLA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPKA VVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSES ERKSFAFFLC PKGDKVLKPP EELAGVISER EYPDFTWSTF LEFTQEHYRA DMNTLEEFSN WLKNRRSF

Best Arabidopsis Sequence Match ( AT5G07200.1 )
(BLAST)

001: MATECIATVP QIFSENKTKE DSSIFDAKLL NQHSHHIPQQ FVWPDHEKPS TDVQPLQVPL IDLAGFLSGD SCLASEATRL VSKAATKHGF FLITNHGVDE
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF

Arabidopsis Description

GA20OX3Gibberellin 20 oxidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q39112]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.