CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

plastid 1
peroxisome 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99892	Canola	cytosol, nucleus, peroxisome	99.74	100.0
CDY00499	Canola	cytosol, nucleus, peroxisome	99.21	99.21
CDY72226	Canola	mitochondrion	67.37	98.84
CDY27101	Canola	cytosol, nucleus, peroxisome	89.47	90.19
CDX91609	Canola	cytosol, nucleus, peroxisome	89.21	89.68
AT5G51810.1	Thale cress	cytosol, nucleus, peroxisome	88.68	89.15
CDY49714	Canola	cytosol, nucleus, peroxisome	66.58	72.29
CDY55723	Canola	cytosol, nucleus, peroxisome	70.79	71.54
CDX92707	Canola	cytosol, nucleus, peroxisome	71.58	71.02
CDX94446	Canola	cytosol, nucleus, peroxisome	70.0	70.74
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	49.74	61.36
VIT_15s0048g01320.t01	Wine grape	cytosol	61.58	60.94
CDX70015	Canola	cytosol, nucleus, peroxisome	60.53	60.69
CDX98998	Canola	cytosol, nucleus, peroxisome	60.53	60.69
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	60.26	60.58
CDY05017	Canola	cytosol, nucleus, peroxisome	60.26	60.42
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	49.74	60.38
CDX81038	Canola	cytosol, nucleus, peroxisome	60.0	60.32
CDY14054	Canola	cytosol, nucleus, peroxisome	59.74	59.89
Solyc01g093980.2.1	Tomato	cytosol	57.37	59.89
CDY00263	Canola	cytosol, nucleus, peroxisome	43.68	59.5
PGSC0003DMT400000036	Potato	cytosol	57.11	59.45
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	55.53	58.45
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	55.53	57.81
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	55.53	57.49
HORVU5Hr1G124120.1	Barley	cytosol	54.21	57.22
KRH65199	Soybean	cytosol	57.37	57.07
KRH48309	Soybean	cytosol	58.16	55.81
GSMUA_AchrUn_...	Banana	cytosol	47.11	55.42
CDY64867	Canola	cytosol	53.95	54.81
EER90481	Sorghum	cytosol	54.47	54.62
CDY52529	Canola	cytosol, nucleus, peroxisome	54.74	54.59
Os03t0856700-02	Rice	cytosol, mitochondrion	51.84	52.96
CDY13228	Canola	cytosol	10.26	52.7
CDY64866	Canola	cytosol, nucleus, peroxisome	42.37	51.94
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	48.68	51.53
TraesCS3A01G399800.1	Wheat	cytosol	48.42	51.4
HORVU3Hr1G089980.2	Barley	cytosol	48.16	51.26
TraesCS3D01G393900.1	Wheat	cytosol	47.89	51.12
TraesCS3B01G432800.1	Wheat	cytosol	48.42	51.11
Zm00001d034898_P001	Maize	plastid	54.21	50.99
CDY12880	Canola	cytosol, nucleus, vacuole	56.05	50.35
CDY60083	Canola	vacuole	53.16	50.25
CDY44829	Canola	cytosol	51.58	50.13
Os07t0169700-01	Rice	plasma membrane	48.16	49.86
EER95912	Sorghum	cytosol	47.89	47.64
CDY13227	Canola	cytosol	21.05	46.78
Zm00001d007894_P001	Maize	cytosol	47.11	45.43
CDY71240	Canola	cytosol, peroxisome, plastid	30.26	43.07
CDY70184	Canola	cytosol	31.32	36.5
CDY36334	Canola	cytosol	10.26	31.97
CDY69351	Canola	cytosol, peroxisome	18.68	31.42
CDX99287	Canola	cytoskeleton, cytosol, peroxisome	27.89	30.46
CDX92296	Canola	cytosol, nucleus, peroxisome	27.63	30.09
CDX82317	Canola	cytosol	27.89	30.03
CDX82318	Canola	cytosol	27.89	30.03
CDY22994	Canola	cytosol	27.89	30.03
CDY22995	Canola	cytosol	27.89	30.03
CDX92294	Canola	cytosol	25.79	27.84
CDX99288	Canola	cytosol	25.79	27.84

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:A0A078EKL0	EnsemblPlants:CDX99893	ProteinID:CDX99893	ProteinID:CDX99893.1
InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00108688001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140
SUPFAM:SSF51197	UniParc:UPI0004EDB1A3	SEG:seg	:	:	:

Description

BnaC09g28120D

Coordinates

chrLK031915:+:53075..54471

Molecular Weight (calculated)

43351.5 Da

IEP (calculated)

5.432

GRAVY (calculated)

-0.375

Length

380 amino acids

Sequence
(BLAST)

001: MAIICTTPTT SPAEKEQEPK QDLENDQTPP LIFNPSLLNV QSQIPNQFIW PDKEKPSIDI PELNVPFIDL SSQDTTLEAS RLIAEACTKH GFFLVVNHGV
101: SESLISDAHR YMESFFDMPL AGKQRAQRKP GESWGYASSF TGRFSTKLPW KETLSFPFSN EISGSRTVQD YFSGTLGQEF EQFGRVYQNY CEAMSSLSLE
201: IMELLGLSLG IKKDHFREFF EENDSIMRLN HYPPCQTPDL TLGTGPHCDP SSLTILHQDQ VNGLQVFVEN QWQSILPNPK AFVVNIGDTF MALSNGIFKS
301: CLHRAVVNRE SARTSMAFFL CPKRDKVVKP PSEILEKMTP RRYPDFTWPM FLEFTQKHYR ADVNTLDSFT NWIITNKFTV

Best Arabidopsis Sequence Match ( AT5G51810.1 )
(BLAST)

001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI

Arabidopsis Description

GA20OX2Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39111]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.