Factsheet for VIT_15s0048g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0022g02310.t01	Wine grape	cytosol	71.35	71.73
CDY49714	Canola	cytosol, nucleus, peroxisome	64.32	70.57
Bra019165.1-P	Field mustard	cytosol	64.32	70.57
Solyc01g093980.2.1	Tomato	cytosol	65.62	69.23
CDY72226	Canola	mitochondrion	46.61	69.11
PGSC0003DMT400000036	Potato	cytosol	65.62	69.04
KRH65199	Soybean	cytosol	67.45	67.8
KRH48309	Soybean	cytosol	68.23	66.16
CDX94446	Canola	cytosol, nucleus, peroxisome	64.58	65.96
CDY55723	Canola	cytosol, nucleus, peroxisome	64.32	65.69
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	61.72	65.65
HORVU5Hr1G124120.1	Barley	cytosol	61.46	65.56
Bra013890.1-P	Field mustard	cytosol	64.06	65.43
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	61.72	64.93
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	61.46	64.31
CDX92707	Canola	cytosol, nucleus, peroxisome	64.06	64.23
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	51.3	63.96
AT4G25420.1	Thale cress	cytosol, nucleus, peroxisome	62.5	63.66
CDY27101	Canola	cytosol, nucleus, peroxisome	62.5	63.66
AT5G51810.1	Thale cress	cytosol, nucleus, peroxisome	62.5	63.49
Bra022565.1-P	Field mustard	cytosol	62.24	63.4
CDX91609	Canola	cytosol, nucleus, peroxisome	61.98	62.96
CDX99892	Canola	cytosol, nucleus, peroxisome	60.94	61.74
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	50.26	61.66
CDX99893	Canola	cytosol, nucleus, peroxisome	60.94	61.58
CDY00499	Canola	cytosol, nucleus, peroxisome	60.94	61.58
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	60.94	61.58
AT1G60980.1	Thale cress	cytosol, mitochondrion, peroxisome	59.9	61.17
AT5G07200.1	Thale cress	cytosol, nucleus, peroxisome	59.38	60.0
CDY05017	Canola	cytosol, nucleus, peroxisome	58.85	59.63
CDY14054	Canola	cytosol, nucleus, peroxisome	58.85	59.63
EER90481	Sorghum	cytosol	58.59	59.37
Bra009285.1-P	Field mustard	cytosol	58.59	59.37
Bra028706.1-P	Field mustard	cytosol	58.59	59.37
CDX70015	Canola	cytosol, nucleus, peroxisome	58.59	59.37
Bra005927.1-P	Field mustard	cytosol	50.26	59.2
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	58.07	58.99
CDX81038	Canola	cytosol, nucleus, peroxisome	58.07	58.99
CDX98998	Canola	cytosol, nucleus, peroxisome	58.07	58.84
Os03t0856700-02	Rice	cytosol, mitochondrion	55.47	57.26
CDY00263	Canola	cytosol, nucleus, peroxisome	41.41	56.99
Zm00001d034898_P001	Maize	plastid	59.9	56.93
Bra027106.1-P	Field mustard	cytosol	55.21	56.38
GSMUA_AchrUn_...	Banana	cytosol	47.4	56.35
Bra039251.1-P	Field mustard	cytosol	53.12	54.55
CDY64867	Canola	cytosol	53.12	54.55
CDY52529	Canola	cytosol, nucleus, peroxisome	53.39	53.81
Bra010064.1-P	Field mustard	cytosol	52.6	53.58
Bra031467.1-P	Field mustard	cytosol	52.6	53.58
TraesCS3D01G393900.1	Wheat	cytosol	48.96	52.81
VIT_18s0001g01390.t01	Wine grape	cytosol	51.82	52.65
HORVU3Hr1G089980.2	Barley	cytosol	48.44	52.1
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	48.7	52.09
TraesCS3A01G399800.1	Wheat	cytosol	48.44	51.96
CDY64866	Canola	cytosol, nucleus, peroxisome	41.41	51.29
TraesCS3B01G432800.1	Wheat	cytosol	47.92	51.11
CDY12880	Canola	cytosol, nucleus, vacuole	56.25	51.06
Os07t0169700-01	Rice	plasma membrane	48.44	50.68
VIT_04s0044g01650.t01	Wine grape	cytosol	49.74	50.66
CDY44829	Canola	cytosol	51.3	50.38
CDY60083	Canola	vacuole	52.34	50.0
EER95912	Sorghum	cytosol	47.4	47.64
Zm00001d007894_P001	Maize	cytosol	48.44	47.21
VIT_04s0044g01520.t01	Wine grape	cytosol	44.01	45.07
VIT_03s0063g01220.t01	Wine grape	cytosol	8.33	33.68
VIT_03s0063g01340.t01	Wine grape	cytosol	28.12	31.12
VIT_03s0063g01250.t01	Wine grape	cytosol	15.1	30.69
VIT_03s0063g01160.t01	Wine grape	cytosol	20.57	29.15
VIT_02s0234g00010.t01	Wine grape	cytosol	26.82	28.85
VIT_03s0063g01280.t01	Wine grape	cytosol	18.49	28.74
VIT_03s0063g01150.t01	Wine grape	cytosol	25.52	28.66
VIT_03s0063g01330.t01	Wine grape	cytosol	22.92	28.21
VIT_03s0063g01210.t01	Wine grape	cytosol	25.0	28.07
VIT_03s0063g01290.t01	Wine grape	cytosol	24.74	27.78
VIT_03s0063g01260.t01	Wine grape	cytosol	24.22	27.19
VIT_03s0063g01180.t01	Wine grape	cytosol	24.48	23.92
VIT_03s0063g01310.t01	Wine grape	cytosol	24.74	16.1

Protein Annotations

EntrezGene:100257500	wikigene:100257500	MapMan:11.6.1.5	Gene3D:2.60.120.330	EMBL:AM475438	ProteinID:CAN77383
ProteinID:CAN77383.1	ProteinID:CCB61368	ProteinID:CCB61368.1	InterPro:DIOX_N	UniProt:F6I351	EMBL:FN596739
GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009416
GO:GO:0009628	GO:GO:0009653	GO:GO:0009686	GO:GO:0009719	GO:GO:0009740	GO:GO:0009791
GO:GO:0009826	GO:GO:0009908	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0016491
GO:GO:0040007	GO:GO:0045544	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	EMBL:KC898188	EntrezGene:LOC100257500	wikigene:LOC100257500	RefSeq:NP_001306210.1	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF358
SUPFAM:SSF51197	UniParc:UPI00015CAFEE	ArrayExpress:VIT_15s0048g01320	EnsemblPlantsGene:VIT_15s0048g01320	EnsemblPlants:VIT_15s0048g01320.t01	RefSeq:XP_002272415
RefSeq:XP_002272415.1	SEG:seg	:	:	:	:

Description

GA20ox1 [Source:UniProtKB/TrEMBL;Acc:F6I351]

Coordinates

chr15:+:15453736..15455160

Molecular Weight (calculated)

43588.1 Da

IEP (calculated)

7.057

GRAVY (calculated)

-0.339

Length

384 amino acids

Sequence
(BLAST)

001: MAMECCTSTM LMPPPRPPLK PLDEANTQHQ SLVFDASVLK YQSTIPSQFI WPDEEKPCAK PPELLVPPID LGGFLSADPL AISNAARLVN EACRKHGFFL
101: VVNHGVDAQL VTEAHKNMDF FFNMSLSEKQ RAQRKVGDHC GYASSFTGRF STKLPWKETL SFRYCDDDQS SRIIEKYFSN VMGEDFKQFG RVYQQYCEAM
201: SRLSLGIMEL LGMSLGVGRE YFREFFEGND SIMRLNYYPP CQKPNLTLGT GPHCDPTSLT ILHQDQVSGL QVFVDEKWHS ISPNSEAFVV NIGDTFMALS
301: NGIYKSCLHR AVVNSQTPRK SLAFFLCPKM EKVVSPPNGL VDANNPRIYP DFTWSSLLEF TQKHYRADTK TLHVFSNWLQ QKNN

Best Arabidopsis Sequence Match ( AT5G51810.1 )
(BLAST)

001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI

Arabidopsis Description

GA20OX2Gibberellin 20 oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39111]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.