Factsheet for Bra039251.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64867	Canola	cytosol	98.93	98.93
CDY64866	Canola	cytosol, nucleus, peroxisome	77.54	93.55
CDY60083	Canola	vacuole	96.79	90.05
Bra031467.1-P	Field mustard	cytosol	78.88	78.25
Bra027106.1-P	Field mustard	cytosol	76.74	76.33
AT1G60980.1	Thale cress	cytosol, mitochondrion, peroxisome	74.06	73.67
Bra009285.1-P	Field mustard	cytosol	68.98	68.07
Bra005927.1-P	Field mustard	cytosol	58.56	67.18
Bra028706.1-P	Field mustard	cytosol	67.91	67.02
Bra019165.1-P	Field mustard	cytosol	54.28	58.0
Bra010064.1-P	Field mustard	cytosol	56.68	56.23
Bra022565.1-P	Field mustard	cytosol	55.35	54.91
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	44.92	54.55
Bra013890.1-P	Field mustard	cytosol	54.81	54.52
PGSC0003DMT400000036	Potato	cytosol	53.21	54.52
Solyc01g093980.2.1	Tomato	cytosol	52.94	54.4
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	54.55	53.68
VIT_15s0048g01320.t01	Wine grape	cytosol	54.55	53.12
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	43.58	52.08
HORVU5Hr1G124120.1	Barley	cytosol	49.2	51.11
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	49.2	50.97
KRH65199	Soybean	cytosol	51.6	50.52
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	48.93	50.14
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	49.2	50.14
GSMUA_AchrUn_...	Banana	cytosol	43.05	49.85
KRH48309	Soybean	cytosol	51.87	48.99
EER90481	Sorghum	cytosol	49.47	48.81
Os03t0856700-02	Rice	cytosol, mitochondrion	47.33	47.58
TraesCS3D01G393900.1	Wheat	cytosol	43.32	45.51
Zm00001d034898_P001	Maize	plastid	48.93	45.3
TraesCS3A01G399800.1	Wheat	cytosol	43.05	44.97
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	42.25	44.01
TraesCS3B01G432800.1	Wheat	cytosol	42.25	43.89
Os07t0169700-01	Rice	plasma membrane	43.05	43.87
HORVU3Hr1G089980.2	Barley	cytosol	41.71	43.7
Bra014019.1-P	Field mustard	cytosol	40.91	42.86
EER95912	Sorghum	cytosol	41.71	40.84
Zm00001d007894_P001	Maize	cytosol	41.44	39.34
Bra022378.1-P	Field mustard	cytosol	28.07	30.09
Bra022377.1-P	Field mustard	cytosol	26.2	27.84
Bra001729.1-P	Field mustard	nucleus	23.26	15.08

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	EnsemblPlantsGene:Bra039251	EnsemblPlants:Bra039251.1	EnsemblPlants:Bra039251.1-P	InterPro:DIOX_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M4FDT0
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF140	SUPFAM:SSF51197	UniParc:UPI000253E84B	:	:	:

Description

AT1G60980 (E=1e-158) ATGA20OX4 | ATGA20OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 4); gibberellin 20-oxidase

Coordinates

chrScaffold000162:+:175188..176593

Molecular Weight (calculated)

43066.4 Da

IEP (calculated)

7.306

GRAVY (calculated)

-0.472

Length

374 amino acids

Sequence
(BLAST)

001: MEYITELSFN GKKTEDNPLT LFGSTVINNQ QNQIPQEFVW PDDKKPSANI PILQIPLIDL AGVLSGDQFL VSEATRLVAE GAKQHGFFLV TNHGVDEGLM
101: SSACTLMDRF FKSPTCEKQK AQRNHDESWG YTSSFVGKFK KNLPWKEMLS FRFSPQEKSE NHSEIVKDFI IKKMGQGYND FGSVYQEYAE AMSNLSLRIM
201: ELLAMSLGIK RSHFVDFFED NESILRLNYY PKCKQPNDVL GSGPHCDPTS LTILQQDHSG LQVFVDNQWQ SIPYNPQALV VNIGDTFRAL TNGRYKSCLH
301: RAVVNSQTER KTLVFFLSPK MDKVVKPPEE LKGERAYPDF TWSLLHEFVM KHYRTDENTL KEFTKWLKTR RIFL

Best Arabidopsis Sequence Match ( AT1G60980.1 )
(BLAST)

001: MECIIKLPQR FNKNKSKKNP LRIFDSTVLN HQPDHIPQEF VWPDHEKPSK NVPILQVPVI DLAGFLSNDP LLVSEAERLV SEAAKKHGFF LVTNHGVDER
101: LLSTAHKLMD TFFKSPNYEK LKAQRKVGET TGYASSFVGR FKENLPWKET LSFSFSPTEK SENYSQTVKN YISKTMGDGY KDFGSVYQEY AETMSNLSLK
201: IMELLGMSLG IKREHFREFF EDNESIFRLN YYPKCKQPDL VLGTGPHCDP TSLTILQQDQ VSGLQVFVDN QWQSIPPIPQ ALVVNIGDTL MALTNGIYKS
301: CLHRAVVNGE TTRKTLAFFL CPKVDKVVKP PSELEGERAY PDFTWSMFLE FTMKHYRADM NTLEEFTNWL KNKGSF

Arabidopsis Description

GA20OX4Gibberellin 20 oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C955]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.