Factsheet for Bra027106.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12880	Canola	cytosol, nucleus, vacuole	99.73	88.65
CDY44829	Canola	cytosol	89.36	85.93
AT1G60980.1	Thale cress	cytosol, mitochondrion, peroxisome	77.39	77.39
Bra039251.1-P	Field mustard	cytosol	76.33	76.74
Bra031467.1-P	Field mustard	cytosol	74.2	74.01
Bra009285.1-P	Field mustard	cytosol	72.61	72.03
Bra005927.1-P	Field mustard	cytosol	61.97	71.47
Bra028706.1-P	Field mustard	cytosol	71.01	70.45
Bra019165.1-P	Field mustard	cytosol	56.38	60.57
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	47.07	57.47
Bra010064.1-P	Field mustard	cytosol	57.45	57.29
PGSC0003DMT400000036	Potato	cytosol	55.05	56.71
Solyc01g093980.2.1	Tomato	cytosol	54.79	56.59
Bra022565.1-P	Field mustard	cytosol	56.65	56.5
Bra013890.1-P	Field mustard	cytosol	56.38	56.38
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	56.38	55.79
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	46.28	55.59
VIT_15s0048g01320.t01	Wine grape	cytosol	56.38	55.21
HORVU5Hr1G124120.1	Barley	cytosol	51.6	53.89
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	51.6	53.74
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	51.6	52.86
KRH65199	Soybean	cytosol	53.46	52.62
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	51.06	52.6
KRH48309	Soybean	cytosol	53.99	51.26
EER90481	Sorghum	cytosol	51.6	51.19
GSMUA_AchrUn_...	Banana	cytosol	43.62	50.77
Os03t0856700-02	Rice	cytosol, mitochondrion	49.47	50.0
TraesCS3D01G393900.1	Wheat	cytosol	46.01	48.6
TraesCS3A01G399800.1	Wheat	cytosol	45.74	48.04
TraesCS3B01G432800.1	Wheat	cytosol	44.95	46.94
Zm00001d034898_P001	Maize	plastid	50.0	46.53
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	44.41	46.52
HORVU3Hr1G089980.2	Barley	cytosol	44.15	46.5
Os07t0169700-01	Rice	plasma membrane	44.95	46.05
Bra014019.1-P	Field mustard	cytosol	42.82	45.1
EER95912	Sorghum	cytosol	44.41	43.72
Zm00001d007894_P001	Maize	cytosol	44.15	42.13
Bra022378.1-P	Field mustard	cytosol	26.6	28.65
Bra022377.1-P	Field mustard	cytosol	25.8	27.56
Bra001729.1-P	Field mustard	nucleus	21.81	14.21

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	EnsemblPlantsGene:Bra027106	EnsemblPlants:Bra027106.1	EnsemblPlants:Bra027106.1-P	InterPro:DIOX_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M4EE95
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF140	SUPFAM:SSF51197	UniParc:UPI000254265A	:	:	:

Description

AT1G60980 (E=7e-171) ATGA20OX4 | ATGA20OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 4); gibberellin 20-oxidase

Coordinates

chrA09:+:8521650..8523437

Molecular Weight (calculated)

42775.9 Da

IEP (calculated)

6.140

GRAVY (calculated)

-0.415

Length

376 amino acids

Sequence
(BLAST)

001: MESIKTLPQT FDEDATKNNP LMIFDSADLN NKSDKIPQEF VWPDHDKPST NVPILQVPLI DLAGFLSGNP FLVSEATRLV AEAAKQHGFF LVINHGIDEK
101: LLSGACTLMD KFFKSPSCEK HKAQRKWGES SGYASSFVGR FKKNLPWKET LSFAFSPGEK SENHSQDVKE FIVKKMGDEY KDFGIVYQEY AEAMSDLSLK
201: IMELLGMSLG INRSHFKEFF EDNESIFRLN YYPQCKQPNV VLGSGPHCDP TSLTILQQDQ VNGLQAFVDN QWQAILPNPQ ALVVNIGDTF MALTNGIYKS
301: CLHRALVNSK TERKTLAFFL SPKMDKVVRP PAELGGERAY PDFTWSMLHE FVMKHYRADE STLDEFTKWH TNRESF

Best Arabidopsis Sequence Match ( AT1G60980.1 )
(BLAST)

001: MECIIKLPQR FNKNKSKKNP LRIFDSTVLN HQPDHIPQEF VWPDHEKPSK NVPILQVPVI DLAGFLSNDP LLVSEAERLV SEAAKKHGFF LVTNHGVDER
101: LLSTAHKLMD TFFKSPNYEK LKAQRKVGET TGYASSFVGR FKENLPWKET LSFSFSPTEK SENYSQTVKN YISKTMGDGY KDFGSVYQEY AETMSNLSLK
201: IMELLGMSLG IKREHFREFF EDNESIFRLN YYPKCKQPDL VLGTGPHCDP TSLTILQQDQ VSGLQVFVDN QWQSIPPIPQ ALVVNIGDTL MALTNGIYKS
301: CLHRAVVNGE TTRKTLAFFL CPKVDKVVKP PSELEGERAY PDFTWSMFLE FTMKHYRADM NTLEEFTNWL KNKGSF

Arabidopsis Description

GA20OX4Gibberellin 20 oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C955]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.