Factsheet for GSMUA_Achr8P19120_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 1
peroxisome 1
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	82.79	81.47
GSMUA_AchrUn_...	Banana	cytosol	84.09	80.19
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	74.03	63.16
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	74.35	62.4
HORVU5Hr1G124120.1	Barley	cytosol	72.73	62.22
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	73.05	61.64
CDY72226	Canola	mitochondrion	51.3	61.0
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	29.55	57.59
PGSC0003DMT400086432	Potato	cytosol	28.57	56.41
EER90481	Sorghum	cytosol	68.51	55.67
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	28.57	54.66
VIT_16s0022g02310.t01	Wine grape	cytosol	67.53	54.45
CDY49714	Canola	cytosol, nucleus, peroxisome	60.71	53.43
KRH38652	Soybean	cytosol	66.23	53.4
GSMUA_Achr8P32560_001	Banana	cytosol, nucleus, peroxisome	56.49	53.37
GSMUA_Achr6P25910_001	Banana	cytosol	54.55	53.33
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	32.79	53.16
Bra019165.1-P	Field mustard	cytosol	60.39	53.14
PGSC0003DMT400062314	Potato	cytosol	64.94	52.91
Bra005927.1-P	Field mustard	cytosol	55.52	52.45
Solyc03g006880.2.1	Tomato	cytosol	64.29	52.38
Solyc11g072310.1.1	Tomato	cytosol	64.29	52.24
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	55.19	52.15
KRG91415	Soybean	cytosol	64.61	51.96
PGSC0003DMT400036523	Potato	cytosol	52.27	51.77
Os03t0856700-02	Rice	cytosol, mitochondrion	62.01	51.34
VIT_15s0048g01320.t01	Wine grape	cytosol	63.96	51.3
KRH35405	Soybean	cytosol	60.39	50.96
PGSC0003DMT400090397	Potato	cytosol	61.69	50.94
AT4G25420.1	Thale cress	cytosol, nucleus, peroxisome	62.34	50.93
Zm00001d034898_P001	Maize	plastid	66.56	50.74
CDX94446	Canola	cytosol, nucleus, peroxisome	61.69	50.53
CDY55723	Canola	cytosol, nucleus, peroxisome	61.36	50.27
Bra013890.1-P	Field mustard	cytosol	61.36	50.27
AT5G51810.1	Thale cress	cytosol, nucleus, peroxisome	61.36	50.0
Solyc01g093980.2.1	Tomato	cytosol	59.09	50.0
CDX99892	Canola	cytosol, nucleus, peroxisome	61.36	49.87
CDY27101	Canola	cytosol, nucleus, peroxisome	61.04	49.87
PGSC0003DMT400000036	Potato	cytosol	59.09	49.86
KRH65199	Soybean	cytosol	61.69	49.74
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	61.36	49.74
CDY00499	Canola	cytosol, nucleus, peroxisome	61.36	49.74
CDX99893	Canola	cytosol, nucleus, peroxisome	61.36	49.74
PGSC0003DMT400042644	Potato	cytosol	54.22	49.7
CDX92707	Canola	cytosol, nucleus, peroxisome	61.69	49.61
Bra022565.1-P	Field mustard	cytosol	60.71	49.6
PGSC0003DMT400071866	Potato	cytosol	60.39	49.6
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	57.79	49.58
CDX91609	Canola	cytosol, nucleus, peroxisome	60.71	49.47
Solyc06g035530.2.1	Tomato	cytosol	59.74	49.46
Solyc09g009110.2.1	Tomato	cytosol	60.39	49.21
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	60.39	49.21
CDX81038	Canola	cytosol, nucleus, peroxisome	60.06	48.94
AT5G07200.1	Thale cress	cytosol, nucleus, peroxisome	60.06	48.68
TraesCS3A01G399800.1	Wheat	cytosol	56.49	48.6
TraesCS3D01G393900.1	Wheat	cytosol	56.17	48.6
TraesCS3B01G432800.1	Wheat	cytosol	56.17	48.06
CDY00263	Canola	cytosol, nucleus, peroxisome	43.51	48.03
KRH09174	Soybean	cytosol	47.4	48.03
KRH48309	Soybean	cytosol	61.69	47.98
HORVU3Hr1G089980.2	Barley	cytosol	55.52	47.9
CDX70015	Canola	cytosol, nucleus, peroxisome	58.77	47.76
Bra028706.1-P	Field mustard	cytosol	58.44	47.49
Bra009285.1-P	Field mustard	cytosol	58.44	47.49
CDX98998	Canola	cytosol, nucleus, peroxisome	58.44	47.49
CDY05017	Canola	cytosol, nucleus, peroxisome	58.44	47.49
AT1G60980.1	Thale cress	cytosol, mitochondrion, peroxisome	57.79	47.34
CDY14054	Canola	cytosol, nucleus, peroxisome	58.12	47.23
Os07t0169700-01	Rice	plasma membrane	56.17	47.14
Bra027106.1-P	Field mustard	cytosol	57.47	47.07
Solyc06g050110.1.1	Tomato	cytosol	55.19	46.83
CDY64867	Canola	cytosol	54.87	45.19
GSMUA_Achr11P...	Banana	cytosol	55.19	45.09
EER95912	Sorghum	cytosol	55.84	45.03
Bra039251.1-P	Field mustard	cytosol	54.55	44.92
Zm00001d007894_P001	Maize	cytosol	56.17	43.91
GSMUA_Achr4P16380_001	Banana	cytosol	54.22	43.83
CDY64866	Canola	cytosol, nucleus, peroxisome	43.18	42.9
Bra031467.1-P	Field mustard	cytosol	52.27	42.71
CDY52529	Canola	cytosol, nucleus, peroxisome	52.6	42.52
CDY60083	Canola	vacuole	54.87	42.04
Bra010064.1-P	Field mustard	cytosol	51.3	41.91
CDY12880	Canola	cytosol, nucleus, vacuole	57.47	41.84
CDY44829	Canola	cytosol	52.92	41.69
PGSC0003DMT400088638	Potato	cytosol	34.09	41.5
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	14.94	40.71
PGSC0003DMT400090198	Potato	mitochondrion	11.69	40.0
Solyc10g045770.1.1	Tomato	cytosol	13.96	39.45
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	15.91	37.98
PGSC0003DMT400091526	Potato	cytosol	29.22	37.66
Solyc10g046820.1.1	Tomato	cytosol, nucleus, peroxisome	23.38	36.55
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	14.94	36.51
CDY13227	Canola	cytosol	17.53	31.58
PGSC0003DMT400089703	Potato	nucleus	14.29	29.33
CDY13228	Canola	cytosol	6.49	27.03
GSMUA_Achr7P08240_001	Banana	cytosol	25.0	24.52
GSMUA_Achr7P08230_001	Banana	cytosol	24.68	23.53

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr8G19120_001	EnsemblPlants:GSMUA_Achr8P19120_001
EnsemblPlants:GSMUA_Achr8T19120_001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M0TRR5	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140	SUPFAM:SSF51197	UniParc:UPI000295DCCF

Description

Gibberellin 20 oxidase 1-D [Source:GMGC_GENE;Acc:GSMUA_Achr8G19120_001]

Coordinates

chr8:-:24064366..24065656

Molecular Weight (calculated)

34043.5 Da

IEP (calculated)

6.923

GRAVY (calculated)

-0.215

Length

308 amino acids

Sequence
(BLAST)

001: MAKPGPPGTP LIFDAAFHSR QASIPEQFVW PEGEAPTPDA HEELVVPLID LSGIMSGDPA AAAAITGSVA DACQRHGFFQ QRAQRRTGES CGYASSFAGR
101: FANKLPWKET LSFRFSPSPL AGDIVEDYIV RTLGEDFRYS GEVYQRYCEA MSNLSLQIME VLGLSLGVGR AHFREFFEGN DSIMRLNYYP PCQRPELTLG
201: TGPHCDPTSL TILHQDDVQG LQVFADGKWR TICPKPDAFV VNIGDTFMAL SNGRYKSCLH RAVVNSKVPR KSLAFFLCPA TDKVKHYRAD MKTLDAFTSW
301: ILRAAAPQ

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.