Factsheet for PGSC0003DMT400090397

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042644	Potato	cytosol	83.65	92.86
PGSC0003DMT400086432	Potato	cytosol	38.61	92.31
Solyc09g009110.2.1	Tomato	cytosol	93.03	91.8
PGSC0003DMT400036523	Potato	cytosol	69.44	83.28
PGSC0003DMT400062314	Potato	cytosol	83.38	82.28
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	34.58	81.65
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	34.58	80.12
PGSC0003DMT400088638	Potato	cytosol	53.62	79.05
PGSC0003DMT400090198	Potato	mitochondrion	18.23	75.56
PGSC0003DMT400071866	Potato	cytosol	71.31	70.93
PGSC0003DMT400091526	Potato	cytosol	45.04	70.29
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	23.86	68.99
KRH38652	Soybean	cytosol	69.97	68.32
VIT_16s0022g02310.t01	Wine grape	cytosol	68.9	67.28
KRH09174	Soybean	cytosol	54.16	66.45
PGSC0003DMT400089703	Potato	nucleus	26.54	66.0
KRG91415	Soybean	cytosol	67.02	65.27
KRH35405	Soybean	cytosol	62.2	63.56
PGSC0003DMT400000036	Potato	cytosol	61.13	62.47
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	50.94	61.69
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	59.52	61.5
HORVU5Hr1G124120.1	Barley	cytosol	59.25	61.39
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	59.25	60.55
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	20.38	60.32
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	59.25	60.22
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	49.6	59.11
EER90481	Sorghum	cytosol	57.1	56.2
Os03t0856700-02	Rice	cytosol, mitochondrion	55.5	55.65
GSMUA_AchrUn_...	Banana	cytosol	47.72	55.11
Zm00001d034898_P001	Maize	plastid	57.64	53.22
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	16.09	53.1
HORVU3Hr1G089980.2	Barley	cytosol	48.79	50.98
TraesCS3D01G393900.1	Wheat	cytosol	48.26	50.56
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	48.26	50.14
TraesCS3A01G399800.1	Wheat	cytosol	47.99	50.0
Os07t0169700-01	Rice	plasma membrane	48.53	49.32
TraesCS3B01G432800.1	Wheat	cytosol	47.19	48.89
EER95912	Sorghum	cytosol	46.92	45.81
Zm00001d007894_P001	Maize	cytosol	47.19	44.67
PGSC0003DMT400090419	Potato	cytosol	19.57	37.82
PGSC0003DMT400066716	Potato	cytosol	26.81	28.25
PGSC0003DMT400066714	Potato	cytosol	25.47	27.07
PGSC0003DMT400066712	Potato	cytosol	9.38	22.15

Protein Annotations

EntrezGene:102598207	MapMan:11.6.1.5	Gene3D:2.60.120.330	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M1DKA9	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400039968	PGSC:PGSC0003DMG400039968	EnsemblPlants:PGSC0003DMT400090397	PRINTS:PR00682	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF140	SUPFAM:SSF51197	UniParc:UPI000295A35C	RefSeq:XP_006357721.1	:

Description

Gibberellin 20-oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400039968]

Coordinates

chr9:+:13856408..13858040

Molecular Weight (calculated)

42820.9 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.387

Length

373 amino acids

Sequence
(BLAST)

001: MTNNSIITYE KSLMLGEEKP LIFDASHMKN ESNIPTQYIW PDDEKPCVVA QELHVPLIDL RGFFSGDPVA TQQASRLVGE ACRSHGFFLV VNHRVDSNLI
101: SKAHRYMDTF FDMPLSEKQK AQRKIGEHCG YASSFTGRFS SKLPWKETLS LRYTAKENSS HIVEEYFQRT LGESFNNLGN VYQEYCNSMN TLSLRIMELL
201: GISLGVQKSH FKEFFEDNES IMRLNYYPPC LKPELTLGTG PHYDPTSLTV LHQDCVSGLQ VFVDNEWYSI CPNFNAFVVN IGDTFMALSN GRYKSCLHRA
301: VVNNTTPRKS LAFFLCPDKD KVVSPPTKLV DYNNPRLYPD FTWPALLEFT QKHHRAETNT LQAFSMWLQE NNI

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.