Factsheet for TraesCS3A01G399800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G393900.1	Wheat	cytosol	95.53	96.07
TraesCS3B01G432800.1	Wheat	cytosol	95.25	94.72
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	94.69	94.43
HORVU3Hr1G089980.2	Barley	cytosol	89.11	89.36
Os07t0169700-01	Rice	plasma membrane	75.42	73.57
EER95912	Sorghum	cytosol	72.35	67.8
Zm00001d007894_P001	Maize	cytosol	71.79	65.23
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	59.22	58.08
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	48.6	56.49
PGSC0003DMT400086432	Potato	cytosol	24.58	56.41
CDY72226	Canola	mitochondrion	39.94	55.21
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	47.77	54.63
CDY49714	Canola	cytosol, nucleus, peroxisome	50.56	51.71
GSMUA_AchrUn_...	Banana	cytosol	46.65	51.7
Bra019165.1-P	Field mustard	cytosol	50.28	51.43
VIT_16s0022g02310.t01	Wine grape	cytosol	54.47	51.05
KRG91415	Soybean	cytosol	54.47	50.91
PGSC0003DMT400062314	Potato	cytosol	53.07	50.26
KRH38652	Soybean	cytosol	53.35	50.0
Bra022565.1-P	Field mustard	cytosol	52.51	49.87
Solyc01g093980.2.1	Tomato	cytosol	50.56	49.73
CDY27101	Canola	cytosol, nucleus, peroxisome	52.23	49.6
PGSC0003DMT400036523	Potato	cytosol	43.02	49.52
Solyc03g006880.2.1	Tomato	cytosol	52.23	49.47
CDX91609	Canola	cytosol, nucleus, peroxisome	52.23	49.47
PGSC0003DMT400091205	Potato	cytosol, nucleus, peroxisome	21.79	49.37
PGSC0003DMT400000036	Potato	cytosol	50.28	49.32
CDY00263	Canola	cytosol, nucleus, peroxisome	38.27	49.1
PGSC0003DMT400092587	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	22.07	49.07
KRH35405	Soybean	cytosol	50.0	49.04
CDY55723	Canola	cytosol, nucleus, peroxisome	51.4	48.94
KRH65199	Soybean	cytosol	51.96	48.69
CDX94446	Canola	cytosol, nucleus, peroxisome	51.12	48.67
Bra013890.1-P	Field mustard	cytosol	51.12	48.67
CDY13228	Canola	cytosol	10.06	48.65
CDX99892	Canola	cytosol, nucleus, peroxisome	51.4	48.55
CDX98998	Canola	cytosol, nucleus, peroxisome	51.4	48.55
AT4G25420.1	Thale cress	cytosol, nucleus, peroxisome	51.12	48.54
VIT_15s0048g01320.t01	Wine grape	cytosol	51.96	48.44
CDX99893	Canola	cytosol, nucleus, peroxisome	51.4	48.42
AT5G51810.1	Thale cress	cytosol, nucleus, peroxisome	51.12	48.41
KRH09174	Soybean	cytosol	41.06	48.36
Solyc11g072310.1.1	Tomato	cytosol	51.12	48.28
Bra009285.1-P	Field mustard	cytosol	51.12	48.28
CDX70015	Canola	cytosol, nucleus, peroxisome	51.12	48.28
CDY00499	Canola	cytosol, nucleus, peroxisome	51.12	48.16
AT5G07200.1	Thale cress	cytosol, nucleus, peroxisome	51.12	48.16
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	51.12	48.16
CDY14054	Canola	cytosol, nucleus, peroxisome	50.84	48.02
PGSC0003DMT400090397	Potato	cytosol	50.0	47.99
PGSC0003DMT400042644	Potato	cytosol	44.97	47.92
PGSC0003DMT400071866	Potato	cytosol	50.0	47.73
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	50.28	47.62
Solyc06g035530.2.1	Tomato	cytosol	49.44	47.58
CDY05017	Canola	cytosol, nucleus, peroxisome	50.28	47.49
KRH48309	Soybean	cytosol	52.51	47.47
CDX81038	Canola	cytosol, nucleus, peroxisome	50.0	47.35
CDX92707	Canola	cytosol, nucleus, peroxisome	50.56	47.26
Bra028706.1-P	Field mustard	cytosol	50.0	47.23
AT1G60980.1	Thale cress	cytosol, mitochondrion, peroxisome	49.44	47.07
Bra005927.1-P	Field mustard	cytosol	42.46	46.63
Solyc09g009110.2.1	Tomato	cytosol	48.88	46.3
Bra027106.1-P	Field mustard	cytosol	48.04	45.74
Bra010064.1-P	Field mustard	cytosol	47.77	45.36
Solyc06g050110.1.1	Tomato	cytosol	45.81	45.18
CDY52529	Canola	cytosol, nucleus, peroxisome	48.04	45.14
PGSC0003DMT400088638	Potato	cytosol	31.84	45.06
PGSC0003DMT400090198	Potato	mitochondrion	11.17	44.44
TraesCS1A01G263600.1	Wheat	cytosol	49.16	44.11
Bra039251.1-P	Field mustard	cytosol	44.97	43.05
CDY64867	Canola	cytosol	44.69	42.78
Bra031467.1-P	Field mustard	cytosol	44.69	42.44
PGSC0003DMT400088528	Potato	cytosol, peroxisome, plastid	15.08	41.86
TraesCS3A01G406200.1	Wheat	plastid	51.4	41.63
PGSC0003DMT400091526	Potato	cytosol	27.65	41.42
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	21.79	41.05
CDY12880	Canola	cytosol, nucleus, vacuole	48.04	40.66
PGSC0003DMT400097234	Potato	cytosol, mitochondrion, plastid	14.25	40.48
CDY44829	Canola	cytosol	44.13	40.41
Solyc10g045770.1.1	Tomato	cytosol	12.29	40.37
CDY60083	Canola	vacuole	45.25	40.3
CDY64866	Canola	cytosol, nucleus, peroxisome	34.08	39.35
CDY13227	Canola	cytosol	18.44	38.6
PGSC0003DMT400086504	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	11.73	37.17
PGSC0003DMT400089703	Potato	nucleus	14.8	35.33
Solyc10g046820.1.1	Tomato	cytosol, nucleus, peroxisome	17.88	32.49
TraesCS4A01G234100.1	Wheat	cytosol	30.45	31.32

Protein Annotations

EnsemblPlants:TraesCS3A01G399800.1	EnsemblPlantsGene:TraesCS3A01G399800	Gene3D:2.60.120.330	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:DIOX_N	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PANTHER:PTHR10209	PANTHER:PTHR10209:SF118	PFAM:PF03171	PFAM:PF14226
PFscan:PS51471	PRINTS:PR00682	SEG:seg	SUPFAM:SSF51197	MapMan:11.6.1.5	:

Description

No Description!

Coordinates

chr3A:+:646684132..646685735

Molecular Weight (calculated)

39232.6 Da

IEP (calculated)

6.369

GRAVY (calculated)

-0.114

Length

358 amino acids

Sequence
(BLAST)

001: MATLVFDAAV LSRKDDIPPQ FVWPADEAPS VHGVEEIAVP VVDIAGFLAG DGAATGGLRD LAAACEKHGF FQVVNHGVDP ALLAKAYRCC DAFYALPLAE
101: KQRAQRRLGE NHGYAGSFVG RFGSKLPWKE TVSFNCSAAP EGARKVVDYF VAVLGEEYRD MGEVWQEYCD EMTRLALDVT DVLAACLGLG RGALRGFFAG
201: DASLMRLNHY PPCQQPHLTL GTGPHHDPTS LTLLHQDDVG GLEVFTGGAW RAVRPRGDAF VVNIGDTFSA LTNGRHISCL HRAVVNSSLA RRSLTFFLNP
301: QLDCPVAPPA ELLAIDGRPR AYPDFTWREF LEFTQKHYRS DWRTLDAFAA WINQGRKG

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.