CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13228	Canola	cytosol	19.16	98.65
CDY00263	Canola	cytosol, nucleus, peroxisome	69.82	95.34
CDY13227	Canola	cytosol	42.78	95.32
CDX70015	Canola	cytosol, nucleus, peroxisome	61.94	62.27
CDX98998	Canola	cytosol, nucleus, peroxisome	61.94	62.27
CDY72226	Canola	mitochondrion	41.99	61.78
CDY14054	Canola	cytosol, nucleus, peroxisome	61.42	61.74
CDX81038	Canola	cytosol, nucleus, peroxisome	60.89	61.38
CDY58871	Canola	cytosol, endoplasmic reticulum, peroxisome	60.89	61.38
CDY05017	Canola	cytosol, nucleus, peroxisome	60.89	61.21
CDY49714	Canola	cytosol, nucleus, peroxisome	55.12	60.0
CDY27101	Canola	cytosol, nucleus, peroxisome	56.17	56.76
CDX91609	Canola	cytosol, nucleus, peroxisome	56.17	56.61
CDY64867	Canola	cytosol	54.86	55.88
CDX92707	Canola	cytosol, nucleus, peroxisome	55.38	55.09
CDX99892	Canola	cytosol, nucleus, peroxisome	54.59	54.88
CDX99893	Canola	cytosol, nucleus, peroxisome	54.59	54.74
CDY00499	Canola	cytosol, nucleus, peroxisome	54.33	54.47
CDY55723	Canola	cytosol, nucleus, peroxisome	53.54	54.26
CDX94446	Canola	cytosol, nucleus, peroxisome	53.28	53.99
VIT_15s0048g01320.t01	Wine grape	cytosol	53.81	53.39
Solyc01g093980.2.1	Tomato	cytosol	50.92	53.3
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	49.87	52.63
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	50.39	52.6
PGSC0003DMT400000036	Potato	cytosol	50.39	52.6
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	42.52	52.6
KRH65199	Soybean	cytosol	52.49	52.36
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	50.39	52.32
CDY64866	Canola	cytosol, nucleus, peroxisome	42.52	52.26
KRH48309	Soybean	cytosol	53.81	51.77
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	42.52	51.76
HORVU5Hr1G124120.1	Barley	cytosol	48.82	51.67
CDY60083	Canola	vacuole	53.54	50.75
CDY44829	Canola	cytosol	51.97	50.64
Os03t0856700-02	Rice	cytosol, mitochondrion	48.82	50.0
CDY12880	Canola	cytosol, nucleus, vacuole	55.38	49.88
EER90481	Sorghum	cytosol	49.61	49.87
GSMUA_AchrUn_...	Banana	cytosol	40.94	48.3
TraesCS3A01G399800.1	Wheat	cytosol	45.14	48.04
HORVU3Hr1G089980.2	Barley	cytosol	44.62	47.62
TraesCS3D01G393900.1	Wheat	cytosol	44.36	47.47
TraesCS3B01G432800.1	Wheat	cytosol	44.62	47.22
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	44.36	47.08
Zm00001d034898_P001	Maize	plastid	48.82	46.04
Os07t0169700-01	Rice	plasma membrane	44.09	45.78
CDY71240	Canola	cytosol, peroxisome, plastid	32.02	45.69
EER95912	Sorghum	cytosol	45.14	45.03
Zm00001d007894_P001	Maize	cytosol	43.83	42.39
CDY70184	Canola	cytosol	33.86	39.57
CDY36334	Canola	cytosol	11.02	34.43
CDY69351	Canola	cytosol, peroxisome	17.85	30.09
CDY22994	Canola	cytosol	27.82	30.03
CDY22995	Canola	cytosol	27.82	30.03
CDX82318	Canola	cytosol	27.82	30.03
CDX82317	Canola	cytosol	27.82	30.03
CDX92296	Canola	cytosol, nucleus, peroxisome	26.51	28.94
CDX99287	Canola	cytoskeleton, cytosol, peroxisome	26.25	28.74
CDX99288	Canola	cytosol	25.72	27.84
CDX92294	Canola	cytosol	25.46	27.56

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	GO:A0A078ISX9	UniProt:A0A078ISX9	EnsemblPlants:CDY52529	ProteinID:CDY52529
ProteinID:CDY52529.1	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00007221001	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682
PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140	SUPFAM:SSF51197	UniParc:UPI0004EE9380	:

Description

BnaC03g75160DBnaC03g75160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISX9]

Coordinates

chrLK033100:+:33688..37240

Molecular Weight (calculated)

43641.7 Da

IEP (calculated)

7.265

GRAVY (calculated)

-0.497

Length

381 amino acids

Sequence
(BLAST)

001: MATPINAIST KCREKSFQSF DAKVVNNQPS NIPSEYVWSD EDKPSTDIKE LQVPILDISS FLSGQDDHVA TSQAFRLVSE AAKLHGFFLV TNHGVQEGIL
101: ARAYKCMGTF FDLPASEKQK AKRKWGEISG YADSFYSELP WKETLTFRFS AEEKLRSGTE TVKDYVSKTM GDGNEEFGTV FHEYSEAMNT LSLNIIEFLG
201: MSLGIERRYM REFYRDNDSI LRLNYYPPCK QPNHTLGTGP HTDPTSLTIL YQDHVGGLQV FVENQWRSIA PKPQSFVVNI GDTFMALTNG IYRSCLHRAV
301: VNKERERKSL AFFLCPQMDK VVKPPKELLE VSGQRLYPNF TWSMFLEFTQ KHYRSDKNTL QKFSDWLRSK EVIDNKLAGQ S

Best Arabidopsis Sequence Match ( AT1G44090.1 )
(BLAST)

001: MCIYASRQTV CPYLTPFKVK RPKSREMNSS DVNFSLLQSQ PNVPAEFFWP EKDVAPSEGD LDLPIIDLSG FLNGNEAETQ LAAKAVKKAC MAHGTFLVVN
101: HGFKSGLAEK ALEISSLFFG LSKDEKLRAY RIPGNISGYT AGHSQRFSSN LPWNETLTLA FKKGPPHVVE DFLTSRLGNH RQEIGQVFQE FCDAMNGLVM
201: DLMELLGISM GLKDRTYYRR FFEDGSGIFR CNYYPPCKQP EKALGVGPHN DPTAITVLLQ DDVVGLEVFA AGSWQTVRPR PGALVVNVGD TFMALSNGNY
301: RSCYHRAVVN KEKVRRSLVF FSCPREDKII VPPPELVEGE EASRKYPDFT WAQLQKFTQS GYRVDNTTLH NFSSWLVSNS DKKST

Arabidopsis Description

GA20OX5Gibberellin 20 oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.