Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49714 | Canola | cytosol, nucleus, peroxisome | 79.84 | 86.0 |
| Bra019165.1-P | Field mustard | cytosol | 79.58 | 85.71 |
| CDY55723 | Canola | cytosol, nucleus, peroxisome | 84.35 | 84.57 |
| CDX92707 | Canola | cytosol, nucleus, peroxisome | 85.68 | 84.33 |
| Bra013890.1-P | Field mustard | cytosol | 84.08 | 84.31 |
| CDX94446 | Canola | cytosol, nucleus, peroxisome | 84.08 | 84.31 |
| AT5G51810.1 | Thale cress | cytosol, nucleus, peroxisome | 74.27 | 74.07 |
| VIT_15s0048g01320.t01 | Wine grape | cytosol | 63.66 | 62.5 |
| GSMUA_Achr8P19120_001 | Banana | cytosol, extracellular, peroxisome | 50.93 | 62.34 |
| GSMUA_Achr2P01010_001 | Banana | cytosol, peroxisome, plastid | 51.19 | 61.66 |
| TraesCS5D01G566200.1 | Wheat | cytosol, peroxisome, plastid | 58.62 | 61.22 |
| AT5G07200.1 | Thale cress | cytosol, nucleus, peroxisome | 61.54 | 61.05 |
| PGSC0003DMT400000036 | Potato | cytosol | 58.89 | 60.82 |
| Solyc01g093980.2.1 | Tomato | cytosol | 58.62 | 60.71 |
| AT1G60980.1 | Thale cress | cytosol, mitochondrion, peroxisome | 60.21 | 60.37 |
| TraesCS5B01G560300.1 | Wheat | cytosol, peroxisome, plastid | 58.62 | 60.22 |
| TraesCS4A01G319100.1 | Wheat | cytosol, peroxisome, plastid | 58.09 | 60.0 |
| HORVU5Hr1G124120.1 | Barley | cytosol | 57.03 | 59.72 |
| KRH65199 | Soybean | cytosol | 59.15 | 58.38 |
| KRH48309 | Soybean | cytosol | 59.95 | 57.07 |
| EER90481 | Sorghum | cytosol | 57.03 | 56.73 |
| Os03t0856700-02 | Rice | cytosol, mitochondrion | 55.44 | 56.18 |
| GSMUA_AchrUn_... | Banana | cytosol | 48.01 | 56.04 |
| Zm00001d034898_P001 | Maize | plastid | 56.76 | 52.97 |
| HORVU3Hr1G089980.2 | Barley | cytosol | 49.34 | 52.1 |
| TraesCS3D01G394000.1 | Wheat | cytosol, peroxisome, plastid | 49.07 | 51.53 |
| TraesCS3D01G393900.1 | Wheat | cytosol | 48.54 | 51.4 |
| TraesCS3A01G399800.1 | Wheat | cytosol | 48.54 | 51.12 |
| TraesCS3B01G432800.1 | Wheat | cytosol | 48.54 | 50.83 |
| Os07t0169700-01 | Rice | plasma membrane | 49.07 | 50.41 |
| EER95912 | Sorghum | cytosol | 48.01 | 47.38 |
| Zm00001d007894_P001 | Maize | cytosol | 48.01 | 45.94 |
| AT1G44090.1 | Thale cress | mitochondrion | 44.56 | 43.64 |
| AT3G19010.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 28.91 | 31.23 |
| AT3G19000.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 27.06 | 28.98 |
Protein Annotations
| MapMan:11.6.1.5 | Gene3D:2.60.120.330 | EntrezGene:828645 | ProteinID:AAA76864.2 | ProteinID:AAC39313.2 | ProteinID:AAC39314.2 |
| ProteinID:AEE85055.1 | ProteinID:AGW24306.1 | ProteinID:AGW24309.1 | ProteinID:AGW24311.1 | ProteinID:AGW24315.1 | ProteinID:AGW24316.1 |
| ProteinID:AGW24325.1 | ProteinID:AGW24329.1 | ArrayExpress:AT4G25420 | EnsemblPlantsGene:AT4G25420 | RefSeq:AT4G25420 | TAIR:AT4G25420 |
| RefSeq:AT4G25420-TAIR-G | EnsemblPlants:AT4G25420.1 | TAIR:AT4G25420.1 | ProteinID:CAB45519.1 | ProteinID:CAB81353.1 | InterPro:DIOX_N |
| Symbol:GA5 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009653 |
| GO:GO:0009686 | GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009740 | GO:GO:0009791 | GO:GO:0009826 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016491 | GO:GO:0040007 |
| GO:GO:0045544 | GO:GO:0046872 | GO:GO:0048366 | GO:GO:0048575 | GO:GO:0055114 | InterPro:IPNS-like |
| InterPro:IPR005123 | InterPro:IPR027443 | RefSeq:NP_194272.1 | InterPro:Oxoglu/Fe-dep_dioxygenase | PFAM:PF03171 | PFAM:PF14226 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009006 |
| PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009049 | PO:PO:0020137 |
| PO:PO:0025281 | PRINTS:PR00682 | PFscan:PS51471 | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF140 | UniProt:Q39110 |
| SUPFAM:SSF51197 | UniProt:U3N1S3 | UniParc:UPI00000489E9 | EMBL:X83379 | : | : |
Description
GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
Coordinates
chr4:-:12990851..12992585
Molecular Weight (calculated)
43226.5 Da
IEP (calculated)
6.059
GRAVY (calculated)
-0.339
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.