Factsheet for Bra013890.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55723	Canola	cytosol, nucleus, peroxisome	99.73	99.73
Bra019165.1-P	Field mustard	cytosol	81.91	88.0
AT4G25420.1	Thale cress	cytosol, nucleus, peroxisome	84.31	84.08
Bra022565.1-P	Field mustard	cytosol	71.81	71.62
Bra028277.1-P	Field mustard	cytosol, nucleus, peroxisome	71.28	70.53
VIT_15s0048g01320.t01	Wine grape	cytosol	65.43	64.06
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	50.27	61.36
PGSC0003DMT400000036	Potato	cytosol	59.04	60.82
Solyc01g093980.2.1	Tomato	cytosol	58.78	60.71
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	50.53	60.7
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	57.18	59.56
Bra005927.1-P	Field mustard	cytosol	51.33	59.2
HORVU5Hr1G124120.1	Barley	cytosol	56.38	58.89
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	57.45	58.86
Bra009285.1-P	Field mustard	cytosol	59.31	58.84
KRH65199	Soybean	cytosol	59.57	58.64
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	56.65	58.36
Bra028706.1-P	Field mustard	cytosol	58.51	58.05
KRH48309	Soybean	cytosol	60.11	57.07
Bra027106.1-P	Field mustard	cytosol	56.38	56.38
GSMUA_AchrUn_...	Banana	cytosol	48.4	56.35
EER90481	Sorghum	cytosol	56.65	56.2
Os03t0856700-02	Rice	cytosol, mitochondrion	55.59	56.18
Bra039251.1-P	Field mustard	cytosol	54.52	54.81
Bra010064.1-P	Field mustard	cytosol	53.72	53.58
Bra031467.1-P	Field mustard	cytosol	53.19	53.05
Zm00001d034898_P001	Maize	plastid	56.65	52.72
HORVU3Hr1G089980.2	Barley	cytosol	48.94	51.54
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	49.2	51.53
TraesCS3D01G393900.1	Wheat	cytosol	48.67	51.4
TraesCS3A01G399800.1	Wheat	cytosol	48.67	51.12
TraesCS3B01G432800.1	Wheat	cytosol	48.94	51.11
Os07t0169700-01	Rice	plasma membrane	49.2	50.41
EER95912	Sorghum	cytosol	47.34	46.6
Zm00001d007894_P001	Maize	cytosol	47.34	45.18
Bra014019.1-P	Field mustard	cytosol	41.49	43.7
Bra022378.1-P	Field mustard	cytosol	27.66	29.8
Bra022377.1-P	Field mustard	cytosol	26.06	27.84
Bra001729.1-P	Field mustard	nucleus	24.73	16.12

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	ProteinID:AAO22519	ProteinID:AAO22519.1	EMBL:AY176675	EnsemblPlantsGene:Bra013890
EnsemblPlants:Bra013890.1	EnsemblPlants:Bra013890.1-P	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	UniProt:M4DBN0	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140	SUPFAM:SSF51197	UniParc:UPI000254684E

Description

AT4G25420 (E=1e-187) GA5, GA20OX1, AT2301, ATGA20OX1 | GA20OX1; gibberellin 20-oxidase

Coordinates

chrA01:-:8269446..8270885

Molecular Weight (calculated)

43168.4 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.378

Length

376 amino acids

Sequence
(BLAST)

001: MAASCVITSP EEEHTPKLDL VTPLVFNPSM LNLQATIPNQ FIWPDDEKPC LEAPELDVPL IDLQNFLAHS HSTLDASRLI SEACYKHGFF LVVNHVISEQ
101: LISDAHEYMS RFFDMPLSEK QRIQRKAGES CGYASSFTGR FSTKLPWKET LSFQFCDDKS RPKNVQDYFC DALGHEFEPF GKVYQEYCEA MSSLSLKIME
201: LLGINLGVSG DYFKSFFEEN DSIMRLNYYP PCQKPDLTFG TGPHCDPTSL TILHQDHVHG LQVFVDNQWR SISPNPKAFV VNIGDTFMAL SNNRYKSCLH
301: RAVVNSKSER KSLAFFLCPK KDRVVKPPRE LLDGNTPRRY PDFTWSMLLE FTQKHYRADM NTLQAFTDWL SNKPIQ

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.